Desulforamulus profundi (DSM 24093, JCM 31387, Bs107)

Name: Desulforamulus profundi (DSM 24093, JCM 31387, Bs107)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132677

Type strain

Strain Designation Bs107

Culture col. no. DSM 24093 JCM 31387 Bs107

NCBI tax ID(s) 1383067

Special Collections DSMZ JCM Literature strains

Links

Desulforamulus profundi Bs107 is an anaerobe, chemolithoautotroph, spore-forming prokaryote that was isolated from deep aquifer water from an oligotrophic gas storage aquifer contaminated with BTEX at a depth of 760 m.

spore-forming Gram-positive rod-shaped anaerobe chemolithoautotroph thermophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397132

JCM 31387,DSM 24093

@ref 20215

Last LPSN update 2025-12-16 10:01:34

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Peptococcaceae

Genus Desulforamulus

Species Desulforamulus profundi

Full scientific name Desulforamulus profundi (Berlendis et al. 2016) Watanabe et al. 2021

Synonyms (1)

Desulfotomaculum profundi

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
25005	positive	3 µm	0.5 µm	rod-shaped

Colony morphology

@ref	Colony color	Incubation period
25005	black	8 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24466	DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)		Medium recipe at MediaDive	Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641; with strain-specific modifications) Composition: Na-pyruvate 2.49252 g/l Na2SO4 1.99402 g/l Na2S2O3 x 5 H2O 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24466	positive	growth	45	thermophilic
25005	positive	maximum	60	thermophilic
25005	positive	optimum	45	thermophilic
25005	positive	growth	30-60
67770	positive	growth	45	thermophilic

Culture pH

@ref	Ability	Type	PH
25005	positive	optimum	7.2
25005	positive	growth	6.3-7.8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
25005	anaerobe
125439	anaerobe

Nutrition type

25005

Typechemolithoautotroph

Spore formation

@ref	Spore description	Type of spore	Spore formation
25005	terminal-spore	spore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25005	NaCl	positive	growth	0-0.5 %
25005	NaCl		optimum	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25005	30089 ChEBI	acetate	+	carbon source
25005	28885 ChEBI	butanol	+/-	carbon source
25005	16000 ChEBI	ethanolamine	+	carbon source
25005	15740 ChEBI	formate	+	carbon source
25005	29806 ChEBI	fumarate	+	carbon source
25005	29806 ChEBI	fumarate	+	fermentation
25005	17754 ChEBI	glycerol	+	carbon source
25005	15361 ChEBI	pyruvate	+	carbon source
25005	15361 ChEBI	pyruvate	+	fermentation
25005	16189 ChEBI	sulfate	+	electron acceptor
25005	17359 ChEBI	sulfite	+	electron acceptor
25005	16094 ChEBI	thiosulfate	+	electron acceptor

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Contamination
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24466	deep aquifer water from an oligotrophic gas storage aquifer contaminated with BTEX (benzene, toluene, ethylbenzene and xylenes) at a depth of 760 m	Paris Basin	France	FRA	Europe
67770	Deep aquifer formation (-760 m) near Paris		France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence KF591694 (>99% sequence identity) for Desulfotomaculum profundi subclade from Microbeatlas

Aquatic Samples	170
Soil Samples	54
Animal Samples	105
Plant Samples	21
Total Samples	350

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24466	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM260785v1 assembly for Desulforamulus profundi Bs107	contig	GCA_002607855	1383067.4	2802429666	1383067	15.24

Genome browser: GCA_002607855

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24466	Desulforamulus profundi strain Bs107 16S ribosomal RNA gene, partial sequence	KF591694	1456		1383067
24466	Desulforamulus profundi strain Bs107 16S ribosomal RNA gene, partial sequence	KF591692	1384		1383067

GC content

@ref	GC-content (mol%)	Method
24466	48.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulforamulus profundi Bs107
NCBI: GCA_002607855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	78.20	no
125439	motility	BacteriaNetⓘ	no	67.00	no
125439	gram_stain	BacteriaNetⓘ	negative	53.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulforamulus profundi Bs107
NCBI: GCA_002607855.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.43	yes
125438	anaerobic	anaerobicⓘ	yes	88.89	no
125438	aerobic	aerobicⓘ	no	94.32	yes
125438	spore-forming	spore-formingⓘ	yes	83.93	yes
125438	thermophilic	thermophileⓘ	no	52.54	no
125438	flagellated	motile2+ⓘ	yes	71.50	no

Literature

Title	Authors	Journal	DOI	Year
Experimental simulation of H₂ coinjection via a high-pressure reactor with natural gas in a low-salinity deep aquifer used for current underground gas storage.	Mura J, Ranchou-Peyruse M, Guignard M, Ducousso M, Larregieu M, Isaure MP, Le Hecho I, Hoareau G, Poulain M, Buruti MS, Chiquet P, Caumette G, Petit A, Cezac P, Ranchou-Peyruse A.	Front Microbiol	10.3389/fmicb.2024.1439866	2024

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24466	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24093
#25005	S. R.-P. Berlendis, M.,Fardeau, M. L.,Lascourrèges, J. F.,Joseph, M.,Ollivier, B.,Aüllo, T.,Dequidt, D.,Magot, M.,Ranchou-Peyruse, A.: Desulfotomaculum aquiferis sp. nov. and Desulfotomaculum profundi sp. nov., isolated from a deep natural gas storage aquifer. IJSEM 66: 4329 - 4338 2016 ( DOI 10.1099/ijsem.0.001352 , PubMed 27473224 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Desulforamulus profundi (DSM 24093, JCM 31387, Bs107)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002607855

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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