Name: Lysobacter cavernae DSM 101561
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132653

Type strain:

Species: Lysobacter cavernae

Culture col. no.: DSM 101561, CPCC 100816, KCTC 42875, YIM C01544

Strain history: <- W. Li, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM C01544 <- J. Cheng, YIM

NCBI tax ID(s): 1685901 (species)

SI-ID 401505

DSM 101561

Special Collections

DSMZ
KCTC

Section

Lysobacter cavernae DSM 101561 is a bacterium that was isolated from soil.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter cavernae**
	Full Scientific Name (LPSN)	Lysobacter cavernae Chen et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24442]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #24442]

Culture medium growth

[Ref.: #24442]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24442]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24442]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #24442]	23541	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24442]	Sample type/isolated from	soil
[Ref.: #24442]	Geographic location (country and/or sea, region)	Yunnan province, Licang city, Sigangli Cave (E 103° 22.791', N 25° 04.270')
[Ref.: #24442]	Country	China
[Ref.: #24442]	Country ISO 3 Code	CHN
[Ref.: #24442]	Continent	Asia
[Ref.: #24442]	Geographic location	25.0712°/103.3800°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24442]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24442]	Lysobacter cavernae strain YIM C01544 16S ribosomal RNA gene, partial sequence	KT306825	1530	GenBank ENA	1685901 tax ID

[Ref.: #24442]

GC-content

64.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24442]

Culture collection no.

DSM 101561, CPCC 100816, KCTC 42875, YIM C01544

[Ref.: #90966]

SI-ID 401505

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter tabacisoli sp. nov., isolated from rhizosphere soil of Nicotiana tabacum L.	Xiao M, Zhou XK, Chen X, Duan YQ, Alkhalifah DHM, Im WT, Hozzein WN, Chen W, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003164	2018	*
Phylogeny	Lysobacter pedocola sp. nov., a novel species isolated from Korean soil.	Jang JH, Lee D, Seo T	J Microbiol	10.1007/s12275-018-8046-y	2018	*
Phylogeny	Lysobacter cavernae sp. nov., a novel bacterium isolated from a cave sample.	Chen W, Zhao YL, Cheng J, Zhou XK, Salam N, Fang BZ, Li QQ, Hozzein WN, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0704-7	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24442

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101561

#68369

Automatically annotated from API 20NE .

#90966

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401505.1 )

* These data were automatically processed and therefore are not curated

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