Streptomyces bryophytorum (DSM 42138, CGMCC 4.7151, NEAU-HZ10)

Name: Streptomyces bryophytorum (DSM 42138, CGMCC 4.7151, NEAU-HZ10)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132652

Type strain

Strain Designation NEAU-HZ10

Culture col. no. DSM 42138 CGMCC 4.7151 NEAU-HZ10

NCBI tax ID(s) 1436133

Special Collections DSMZ Wink compendium

History DSMZ <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-HZ10 <- C. Li

Links

Streptomyces bryophytorum NEAU-HZ10 is a bacterium that builds an aerial mycelium and was isolated from moss.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400339

DSM 42138

@ref 20215

Last LPSN update 2026-05-29 08:37:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces bryophytorum

Full scientific name Streptomyces bryophytorum Li et al. 2016

Synonyms (1)

Actinacidiphila bryophytorum

Morphology

Cell morphology

@ref	Confidence	Gram stain
125439	91.835
125439	99.536	positive
125438	90.504	positive

Colony morphology

@ref	Colony color	Medium used
69349	Fawn brown (8007)	ISP 3
69349	Clay brown (8003), Ochre brown (8001)	suter without tyrosine
69349	Clay brown (8003)	ISP 4
69349	Clay brown (8003), Copper brown (8004)	ISP 2
69349	Chocolate brown (8017)	ISP 7
69349	Nut brown (8011)	suter with tyrosine
69349	Sand yellow (1002)	ISP 6
69349	Signal brown (8002)	ISP 5

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69349	Aerial mycelium		ISP 2
69349	Aerial mycelium		ISP 3
69349	Aerial mycelium		ISP 4
69349	Aerial mycelium	Agate grey (7038)	ISP 5
69349	Aerial mycelium		ISP 6
69349	Aerial mycelium		ISP 7
69349	Aerial mycelium		suter with tyrosine
69349	Aerial mycelium		suter without tyrosine

Pigmentation

@ref	Production	Color	Name
69349			melanin pigment
69349		Clay brown (8003), fawn brown (8007)	soluble pigment

Multimedia

@ref:	69349
multimedia content:	DSM_42138_image3.jpeg
multimedia.multimedia content:	DSM_42138_image3.jpeg
caption:	Plates (ISP3, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69349
multimedia content:	DSM_42138_image4.jpeg
multimedia.multimedia content:	DSM_42138_image4.jpeg
caption:	Plates (ISP3, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
24441	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
24441	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
24441	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24441	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.059

Spore formation

@ref	Spore formation	Confidence
125438		92.119

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69349	NaCl	positive	growth	0-7.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69349	22599 ChEBI	arabinose	+	growth
69349	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69349	28757 ChEBI	fructose	-	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69349	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69349	37684 ChEBI	mannose	-	growth
69349	17268 ChEBI	myo-inositol	-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69349	16634 ChEBI	raffinose	+	growth
69349	26546 ChEBI	rhamnose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69349	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69349	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69349	-	-	-	+	-	+	-	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69349	not determinedn.d.	+	+	+	-	+	+/-	-	-	-	+	+	+	+	-	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Moss

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24441	moss	Heilongjiang Province, Wuchang (44° 15' N, 127° 54' E)	China	CHN	Asia	44.25	127.9 44.25/127.9

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24441	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	SBRY-DSM42138-v2 assembly for Actinacidiphila bryophytorum	contig	GCA_910593825	1436133.7	8049224698	1436133	74.53
66792	ASM1691683v1 assembly for Actinacidiphila bryophytorum DSM 42138	contig	GCA_016916835	1436133.3	2997546224	1436133	58.76
66792	Scock-DSM42063-v1 assembly for Actinacidiphila cocklensis	scaffold	GCA_907177275	887465.3	8045974912	887465	48.28
124043	ASM4265592v1 assembly for Actinacidiphila bryophytorum CGMCC 4.7151	scaffold	GCA_042655925			1436133	44.82
66792	ASM1716473v1 assembly for Actinacidiphila bryophytorum DSM 42138	contig	GCA_017164735	1436133.4	8118819483	1436133	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24441	Actinacidiphila bryophytorum strain NEAU-HZ10 16S ribosomal RNA gene, partial sequence	KF923804	1518		1436133

GC content

@ref	GC-content (mol%)	Method
24441	72.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: SBRY-DSM42138-v2 assembly for Actinacidiphila bryophytorum
NCBI: GCA_910593825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	99.54	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.06	no
125439	motility	BacteriaNetⓘ	no	91.84	no
125439	spore_formation	BacteriaNetⓘ	yes	80.42	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces bryophytorum strain DSM 42138
PATRIC: 1436133.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.50	no
125438	anaerobic	anaerobicⓘ	no	94.53	no
125438	spore-forming	spore-formingⓘ	yes	92.12	no
125438	aerobic	aerobicⓘ	yes	87.83	no
125438	thermophilic	thermophileⓘ	no	96.40	no
125438	flagellated	motile2+ⓘ	no	89.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces acididurans sp. nov., isolated from peat swamp forest soil.	Chantavorakit T, Klaysubun C, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004849	2021
Phylogeny	Streptomyces bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta).	Li C, Jin P, Liu C, Ma Z, Zhao J, Li J, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-016-0722-5	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24441	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42138
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69349	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Streptomyces bryophytorum (DSM 42138, CGMCC 4.7151, NEAU-HZ10)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_910593825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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