Name: Streptomyces bryophytorum NEAU-HZ10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132652

Type strain:

Species: Streptomyces bryophytorum

Strain Designation: NEAU-HZ10

Culture col. no.: DSM 42138, CGMCC 4.7151

Strain history: <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-HZ10 <- C. Li

NCBI tax ID(s): 1436133 (species)

SI-ID 400339

DSM 42138

Section

Streptomyces bryophytorum NEAU-HZ10 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from moss.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces bryophytorum**
	Full Scientific Name (LPSN)	Streptomyces bryophytorum Li et al. 2016

Synonym

Actinacidiphila bryophytorum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %94.194

[Ref.: #69349]	Colony color	Fawn brown (8007)
[Ref.: #69349]	Cultivation medium used	ISP 3

[Ref.: #69349]	Colony color	Clay brown (8003), Ochre brown (8001)
[Ref.: #69349]	Cultivation medium used	suter without tyrosine

[Ref.: #69349]	Colony color	Clay brown (8003)
[Ref.: #69349]	Cultivation medium used	ISP 4

[Ref.: #69349]	Colony color	Clay brown (8003), Copper brown (8004)
[Ref.: #69349]	Cultivation medium used	ISP 2

[Ref.: #69349]	Colony color	Chocolate brown (8017)
[Ref.: #69349]	Cultivation medium used	ISP 7

[Ref.: #69349]	Colony color	Nut brown (8011)
[Ref.: #69349]	Cultivation medium used	suter with tyrosine

[Ref.: #69349]	Colony color	Sand yellow (1002)
[Ref.: #69349]	Cultivation medium used	ISP 6

[Ref.: #69349]	Colony color	Signal brown (8002)
[Ref.: #69349]	Cultivation medium used	ISP 5

[Ref.: #69349]	Pigment production	no
[Ref.: #69349]	Pigment name	Melanin
[Ref.: #69349]	Pigment production	yes
[Ref.: #69349]	Pigmentation color	Clay brown (8003), fawn brown (8007)
[Ref.: #69349]	Pigment name	soluble pigment

[Ref.: #69349]	Multicellular complex forming ability	no
[Ref.: #69349]	Multicellular complex name	Aerial mycelium
[Ref.: #69349]	Medium Name (multicellularity)	ISP 2

[Ref.: #69349]	Multicellular complex forming ability	no
[Ref.: #69349]	Multicellular complex name	Aerial mycelium
[Ref.: #69349]	Medium Name (multicellularity)	ISP 3

[Ref.: #69349]	Multicellular complex forming ability	no
[Ref.: #69349]	Multicellular complex name	Aerial mycelium
[Ref.: #69349]	Medium Name (multicellularity)	ISP 4

[Ref.: #69349]	Multicellular complex forming ability	yes
[Ref.: #69349]	Multicellular complex name	Aerial mycelium
[Ref.: #69349]	Multicellular complex color	Agate grey (7038)
[Ref.: #69349]	Medium Name (multicellularity)	ISP 5

[Ref.: #69349]	Multicellular complex forming ability	no
[Ref.: #69349]	Multicellular complex name	Aerial mycelium
[Ref.: #69349]	Medium Name (multicellularity)	ISP 6

[Ref.: #69349]	Multicellular complex forming ability	no
[Ref.: #69349]	Multicellular complex name	Aerial mycelium
[Ref.: #69349]	Medium Name (multicellularity)	ISP 7

[Ref.: #69349]	Multicellular complex forming ability	no
[Ref.: #69349]	Multicellular complex name	Aerial mycelium
[Ref.: #69349]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69349]	Multicellular complex forming ability	no
[Ref.: #69349]	Multicellular complex name	Aerial mycelium
[Ref.: #69349]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69349]

Caption:

Plates (ISP3, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69349]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69349]

Caption:

Plates (ISP3, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69349]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24441]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #24441]

Culture medium growth

[Ref.: #24441]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24441]

Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #24441]

Culture medium growth

[Ref.: #24441]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24441]

Culture medium composition

expand / minimize

[Ref.: #24441]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #24441]

Culture medium growth

[Ref.: #24441]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24441]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24441]			growth	28 °C

[Ref.: #24441]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69349]		NaCl		growth	0-7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69349]	arabinose ChEBI	+	growth
[Ref.: #69349]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69349]	fructose ChEBI	-	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69349]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69349]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69349]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69349]	raffinose ChEBI	+	growth
[Ref.: #69349]	rhamnose ChEBI	+	growth
[Ref.: #69349]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69349]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69349]	3842	-	-	-	+	-	+	-	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69349]	6026	not determinedn.d.	+	+	+	-	+	+/-	-	-	-	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24441]	Sample type/isolated from	moss
[Ref.: #24441]	Geographic location (country and/or sea, region)	Heilongjiang Province, Wuchang (44° 15' N, 127° 54' E)
[Ref.: #24441]	Country	China
[Ref.: #24441]	Country ISO 3 Code	CHN
[Ref.: #24441]	Continent	Asia
[Ref.: #24441]	Geographic location	44.2500°/127.9000°
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Moss

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24441]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24441]	Streptomyces bryophytorum strain NEAU-HZ10 16S ribosomal RNA gene, partial sequence	KF923804	1518	ENA	1436133 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinacidiphila bryophytorum DSM 42138	GCA_016916835	contig	GenBank	1436133 tax ID	*
[Ref.: #66792]	Actinacidiphila bryophytorum DSM 42138	GCA_017164735	contig	GenBank	1436133 tax ID	*
[Ref.: #66792]	Streptomyces bryophytorum strain DSM 42138	1436133.3	wgs	PATRIC	1436133 tax ID	*
[Ref.: #66792]	Streptomyces bryophytorum strain DSM 42138	1436133.4	wgs	PATRIC	1436133 tax ID	*
[Ref.: #66792]	Streptomyces cocklensis DSM 42138	GCA_907177275	scaffold	GenBank	887465 tax ID	*

[Ref.: #24441]

GC-content

72.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces bryophytorum strain DSM 42138 PATRIC: 1436133.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces bryophytorum strain DSM 42138 PATRIC: 1436133.3
[Ref.: #69480]	motile	no	93.965	no
[Ref.: #69480]	gram-positive	yes	89.331	no
[Ref.: #69480]	anaerobic	no	99.247	no
[Ref.: #69480]	halophile	no	94.603	no
[Ref.: #69480]	spore-forming	yes	94.484	no
[Ref.: #69480]	thermophile	no	98.716	yes
[Ref.: #69480]	glucose-util	yes	88.822	no
[Ref.: #69480]	aerobic	yes	92.355	no
[Ref.: #69480]	flagellated	no	97.961	no
[Ref.: #69480]	glucose-ferment	no	86.402	no

Availability in culture collections External links

[Ref.: #24441]

Culture collection no.

DSM 42138, CGMCC 4.7151

[Ref.: #90965]

SI-ID 400339

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces acididurans sp. nov., isolated from peat swamp forest soil.	Chantavorakit T, Klaysubun C, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004849	2021	*
Phylogeny	Streptomyces bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta).	Li C, Jin P, Liu C, Ma Z, Zhao J, Li J, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-016-0722-5	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24441

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42138

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69349

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90965

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400339.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces bryophytorum strain DSM 42138

Streptomyces bryophytorum strain DSM 42138

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