Arenimicrobium luteum (DSM 26556, LMG 29166, Ac_12_G8)

Name: Arenimicrobium luteum (DSM 26556, LMG 29166, Ac_12_G8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132622

Type strain

Strain Designation Ac_12_G8

Culture col. no. DSM 26556 LMG 29166 Ac_12_G8

NCBI tax ID(s) 1560324

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Arenimicrobium luteum Ac_12_G8 is an obligate aerobe, chemoorganoheterotroph, mesophilic prokaryote that forms circular colonies and has multiple antibiotic resistances.

antibiotic resistance Gram-negative ovoid-shaped colony-forming obligate aerobe chemoorganoheterotroph mesophilic 16S sequence

Name and taxonomic classification

SI-ID 405870

LMG 29166,DSM 26556

@ref 20215

Last LPSN update 2025-12-16 10:01:33

Domain Pseudomonadati

Phylum Acidobacteriota

Class Blastocatellia

Order Blastocatellales

Family Arenimicrobiaceae

Genus Arenimicrobium

Species Arenimicrobium luteum

Full scientific name Arenimicrobium luteum Wüst et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43144	negative	1.0-2.3 µm	0.7-1.0 µm	ovoid-shaped
43144				rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43144	1 mm	orange-yellowish	circular	Solid media

Culture and growth conditions

Culture medium

@ref	Name	Growth
43144	Solid media
24411	SSE/HD1:10 (DSMZ Medium 1426)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24411	positive	growth	28	mesophilic
43144	positive	optimum	28.0-44.6	mesophilic
43144	positive	growth	8.0-44.6

Culture pH

@ref	Ability	Type	PH
43144	positive	optimum	5.5-7.0
43144	positive	growth	3.5-9.5

Physiology and metabolism

Oxygen tolerance

43144

Oxygen toleranceobligate aerobe

Nutrition type

43144

Typechemoorganoheterotroph

Antibiotic susceptibility testing

	Test 1
@ref	24411
Medium	M 1426
Incubation temperature	28
Oxygen condition	aerob
Manual_annotation	1
	Inhibition zone diameter in mm
Penicillin G	0
Oxacillin	0
Ampicillin	0
Ticarcillin	48
Mezlocillin	0
Cefalotin	32-34
Cefazolin	0
Cefotaxime	0
Aztreonam	0
Imipenem	36-38
Tetracycline	>50
Chloramphenicol	38
Gentamycin	>50
Amikacin	0
Vancomycin	>50
Erythromycin	20
Lincomycin	>50
Ofloxacin	>50
Norfloxacin	48-50
Colistin	0
Pipemidic acid	28-30
Nitrofurantoin	>50
Bacitracin	0
Polymyxin b	0
Kanamycin	>50
Neomycin	20
Doxycycline	>50
Ceftriaxone	34-36
Clindamycin	>50
Fosfomycin	>50
Moxifloxacin	>50
Linezolid	38-40
Nystatin	0
Quinupristin/dalfopristin	14
Teicoplanin	30
Piperacillin/tazobactam	0

Spore formation

@ref	Type of spore	Spore formation
43144	spore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43144	NaCl	positive	maximum	0.25 %(w/v)
43144	NaCl	positive	optimum	0 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43144	52682 ChEBI	1,2-butandiol	-	growth
43144	16997 ChEBI	1,2-propandiol	-	growth
43144	62064 ChEBI	2,3-butanediol	-	growth
43144	64552 ChEBI	2-hydroxybutyrate	-	growth
43144		2-oxogluconate	-	growth
43144	30916 ChEBI	2-oxoglutarate	-	growth
43144	28644 ChEBI	2-oxopentanoate	-	growth
43144	16724 ChEBI	4-hydroxybutyrate	-	growth
43144		4-nitrophenyl beta-D-galactopyranoside hydrolysate	+	hydrolysis
43144	39150 ChEBI	4-oxopentanoate	-	growth
43144	30089 ChEBI	acetate	-	growth
43144	15688 ChEBI	acetoin	-	growth
43144	17128 ChEBI	adipate	-	growth
43144	16449 ChEBI	alanine	-	growth
43144	22605 ChEBI	arabinitol	-	growth
43144	22599 ChEBI	arabinose	-	growth
43144	29016 ChEBI	arginine	-	growth
43144	22651 ChEBI	ascorbate	-	growth
43144	22653 ChEBI	asparagine	-	growth
43144	35391 ChEBI	aspartate	-	growth
43144	16150 ChEBI	benzoate	-	growth
43144	8295 ChEBI	beta-hydroxybutyrate	-	growth
43144	28885 ChEBI	butanol	-	growth
43144	17968 ChEBI	butyrate	-	growth
43144	85146 ChEBI	carboxymethylcellulose	-	growth
43144		casamino acids	+	growth
43144		casein hydrolysate	+	growth
43144	17057 ChEBI	cellobiose	-	growth
43144	62968 ChEBI	cellulose	-	growth
43144	62968 ChEBI	cellulose	-	hydrolysis
43144	17029 ChEBI	chitin	-	growth
43144	16947 ChEBI	citrate	-	growth
43144	35899 ChEBI	crotonate	-	growth
43144	15356 ChEBI	cysteine	-	growth
43144	27689 ChEBI	decanoate	-	growth
43144	17113 ChEBI	erythritol	-	growth
43144	23958 ChEBI	erythrulose	-	growth
43144	4853 ChEBI	esculin	+	hydrolysis
43144	16236 ChEBI	ethanol	-	growth
43144	29362 ChEBI	ethylene	-	growth
43144		fermented rumen extract	-	growth
43144	15740 ChEBI	formate	-	growth
43144	28757 ChEBI	fructose	-	growth
43144	33984 ChEBI	fucose	+/-	growth
43144	29806 ChEBI	fumarate	-	growth
43144	16813 ChEBI	galactitol	-	growth
43144	28260 ChEBI	galactose	-	growth
43144	5291 ChEBI	gelatin	-	hydrolysis
43144	24265 ChEBI	gluconate	-	growth
43144	5417 ChEBI	glucosamine	-	growth
43144	17234 ChEBI	glucose	-	growth
43144	17234 ChEBI	glucose	-	fermentation
43144	24297 ChEBI	glucuronate	-	growth
43144	29987 ChEBI	glutamate	-	growth
43144	28300 ChEBI	glutamine	-	growth
43144	17754 ChEBI	glycerol	-	growth
43144	15428 ChEBI	glycine	-	growth
43144	13643 ChEBI	glycol	-	growth
43144	29805 ChEBI	glycolate	-	growth
43144	36655 ChEBI	glyoxylate	-	growth
43144	32362 ChEBI	heptanoate	-	growth
43144	27570 ChEBI	histidine	-	growth
43144	48944 ChEBI	isobutyrate	-	growth
43144	16087 ChEBI	isocitrate	-	growth
43144	24898 ChEBI	isoleucine	-	growth
43144	48942 ChEBI	isovalerate	-	growth
43144	24996 ChEBI	lactate	-	growth
43144	17716 ChEBI	lactose	-	growth
43144	6364 ChEBI	laminarin	-	growth
43144	25017 ChEBI	leucine	-	growth
43144	6457 ChEBI	lignin	-	growth
43144	25094 ChEBI	lysine	-	growth
43144	25097 ChEBI	lyxose	-	growth
43144	25115 ChEBI	malate	-	growth
43144	18300 ChEBI	maleic acid	-	growth
43144	15792 ChEBI	malonate	-	growth
43144	17306 ChEBI	maltose	+	growth
43144	29864 ChEBI	mannitol	-	growth
43144	37684 ChEBI	mannose	+/-	growth
43144	6731 ChEBI	melezitose	-	growth
43144	17790 ChEBI	methanol	-	growth
43144	16811 ChEBI	methionine	-	growth
43144	17268 ChEBI	myo-inositol	-	growth
43144	28037 ChEBI	N-acetylgalactosamine	-	growth
43144	506227 ChEBI	N-acetylglucosamine	-	growth
43144	32544 ChEBI	nicotinate	-	growth
43144	17632 ChEBI	nitrate	-	reduction
43144	25646 ChEBI	octanoate	-	growth
43144	18257 ChEBI	ornithine	-	growth
43144	16452 ChEBI	oxaloacetate	-	growth
43144	17309 ChEBI	pectin	-	growth
43144		peptone	+	growth
43144	28044 ChEBI	phenylalanine	-	growth
43144	26271 ChEBI	proline	-	growth
43144	28831 ChEBI	propanol	-	growth
43144	17272 ChEBI	propionate	-	growth
43144	36241 ChEBI	protocatechuate	+	growth
43144	15361 ChEBI	pyruvate	-	growth
43144	16634 ChEBI	raffinose	-	growth
43144	26546 ChEBI	rhamnose	-	growth
43144	15963 ChEBI	ribitol	+/-	growth
43144	17822 ChEBI	serine	-	growth
43144	36208 ChEBI	shikimate	-	growth
43144	30911 ChEBI	sorbitol	-	growth
43144	27922 ChEBI	sorbose	-	growth
43144	28017 ChEBI	starch	+	growth
43144	28017 ChEBI	starch	+	hydrolysis
43144	143136 ChEBI	succinamate	-	growth
43144	17992 ChEBI	sucrose	+/-	growth
43144	30929 ChEBI	tartrate	-	growth
43144	26986 ChEBI	threonine	-	growth
43144	27082 ChEBI	trehalose	-	growth
43144		trimethoxybenzoate	-	growth
43144	27897 ChEBI	tryptophan	-	growth
43144	53426 ChEBI	tween 80	-	growth
43144	18186 ChEBI	tyrosine	-	growth
43144	16199 ChEBI	urea	-	hydrolysis
43144	27266 ChEBI	valine	-	growth
43144	37166 ChEBI	xylan	-	growth
43144	37166 ChEBI	xylan	-	hydrolysis
43144	17151 ChEBI	xylitol	-	growth
43144	18222 ChEBI	xylose	-	growth
43144		yeast extract	+	growth

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43144	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43144	acid phosphatase	+	3.1.3.2
43144	alkaline phosphatase	+	3.1.3.1
43144	alpha-chymotrypsin	+	3.4.21.1
43144	alpha-fucosidase	+/-	3.2.1.51
43144	alpha-galactosidase	+	3.2.1.22
43144	alpha-glucosidase	+	3.2.1.20
43144	beta-galactosidase	+	3.2.1.23
43144	beta-glucosidase	+	3.2.1.21
43144	catalase	+	1.11.1.6
43144	cystine arylamidase	+	3.4.11.3
43144	cytochrome oxidase	-	1.9.3.1
43144	esterase (C 4)	+
43144	esterase Lipase (C 8)	+
43144	leucine arylamidase	+	3.4.11.1
43144	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43144	naphthol-AS-BI-phosphohydrolase	+
43144	trypsin	+/-	3.4.21.4
43144	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

43144

Fatty acid	Percentage
C15:0 iso	59.8
C15:1 iso h / C13:0 3OH	11.4
C17:0 iso	3.6
C17:0 anteiso	3.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic
#Environmental	#Terrestrial
#Environmental	#Terrestrial
#Climate	#Hot

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24411	irrigated agricultural, sandy semiarid savanna soil	Kavango region, Mashare (17° 53' 32.4'' S, 20° 11'15.4'' E)	Namibia	NAM	Africa	-17.8923	20.1876 -17.8923/20.1876
43144	sandy agriculturally used old flood plain soil	Mashare, Namibia	Namibia	NAM	Africa	-17	20 -17/20

Taxonmaps

69479

Global distribution of 16S sequence KM659878 (>99% sequence identity) for Arenimicrobium from Microbeatlas

Aquatic Samples	4
Soil Samples	188
Animal Samples	5
Plant Samples	3
Total Samples	200

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24411	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24411	Arenimicrobium luteum strain Ac_12_G8 16S ribosomal RNA gene, partial sequence	KM659878	1521		1560324

GC content

@ref	GC-content (mol%)	Method
24411	66.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevitalea aridisoli, B. deliciosa and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from savanna soil and description of the novel family Pyrinomonadaceae.	Wust PK, Foesel BU, Geppert A, Huber KJ, Luckner M, Wanner G, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001199	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24411	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26556
#43144	Pia K. Wüst, Bärbel U. Foesel, Alicia Geppert, Katharina J. Huber, Manja Luckner, Gerhard Wanner and Jörg Overmann: Brevitalea aridisoli, B. deliciosa and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from savanna soil and description of the novel family Pyrinomonadaceae. IJSEM 66: 3355 - 3366 2016 ( DOI 10.1099/ijsem.0.001199 , PubMed 27255677 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arenimicrobium luteum (DSM 26556, LMG 29166, Ac_12_G8)

Name and taxonomic classification