Name: Arenimicrobium luteum Ac_12_G8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132622

Type strain:

Species: Arenimicrobium luteum

Strain Designation: Ac_12_G8

Culture col. no.: DSM 26556, LMG 29166

Strain history: <- P. Wüst, Leibniz-Institut DSMZ GmbH, Germany; Ac_12_G8

NCBI tax ID(s): 1560324 (species)

SI-ID 405870

DSM 26556

Section

Arenimicrobium luteum Ac_12_G8 is an obligate aerobe, chemoorganoheterotroph, mesophilic bacterium that forms circular colonies and was isolated from irrigated agricultural, sandy semiarid savanna soil.

colony-forming
Gram-negative
ovoid-shaped
chemoorganoheterotroph
mesophilic
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Acidobacteriota*
	Class	*Blastocatellia*
	Order	*Blastocatellales*
	Family	*Arenimicrobiaceae*
	Genus	*Arenimicrobium*
	Species	**Arenimicrobium luteum**
	Full Scientific Name (LPSN)	Arenimicrobium luteum Wüst et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43144]	Gram stain	negative

[Ref.: #43144]	Cell length	1.0-2.3 µm

[Ref.: #43144]	Cell width	0.7-1.0 µm

[Ref.: #43144]	Cell shape	ovoid-shaped
[Ref.: #43144]	Cell shape	rod-shaped

[Ref.: #43144]	Motility	no

[Ref.: #43144]	Colony size	1 mm
[Ref.: #43144]	Colony color	orange-yellowish
[Ref.: #43144]	Colony shape	circular
[Ref.: #43144]	Cultivation medium used	Solid media

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43144]

Culture medium

Solid media

[Ref.: #43144]

Culture medium growth

[Ref.: #24411]

Culture medium

SSE/HD1:10 (DSMZ Medium 1426)

[Ref.: #24411]

Culture medium growth

[Ref.: #24411]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24411]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24411]	growth	28 °C
[Ref.: #43144]	optimum	32.9-37.2 °C
[Ref.: #43144]	growth	8.0-44.6 °C

[Ref.: #24411]	Temperature range	mesophilic
[Ref.: #43144]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43144]			optimum	5.5-7.0
[Ref.: #43144]			growth	3.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43144]

Oxygen tolerance

obligate aerobe

[Ref.: #43144]

Nutrition type

chemoorganoheterotroph

[Ref.: #43144]	Type of spore	spore
[Ref.: #43144]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43144]		NaCl		maximum	0.25	%(w/v)
[Ref.: #43144]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43144]	1,2-butandiol ChEBI	-	growth
[Ref.: #43144]	1,2-propandiol ChEBI	-	growth
[Ref.: #43144]	2,3-butanediol ChEBI	-	growth
[Ref.: #43144]	2-hydroxybutyrate ChEBI	-	growth
[Ref.: #43144]	2-oxogluconate	-	growth
[Ref.: #43144]	2-oxoglutarate ChEBI	-	growth
[Ref.: #43144]	2-oxopentanoate ChEBI	-	growth
[Ref.: #43144]	4-hydroxybutyrate ChEBI	-	growth
[Ref.: #43144]	4-nitrophenyl beta-D-galactopyranoside hydrolysate	+	hydrolysis
[Ref.: #43144]	4-oxopentanoate ChEBI	-	growth
[Ref.: #43144]	acetate ChEBI	-	growth
[Ref.: #43144]	acetoin ChEBI	-	growth
[Ref.: #43144]	adipate ChEBI	-	growth
[Ref.: #43144]	alanine ChEBI	-	growth
[Ref.: #43144]	arabinitol ChEBI	-	growth
[Ref.: #43144]	arabinose ChEBI	-	growth
[Ref.: #43144]	arginine ChEBI	-	growth
[Ref.: #43144]	ascorbate ChEBI	-	growth
[Ref.: #43144]	asparagine ChEBI	-	growth
[Ref.: #43144]	aspartate ChEBI	-	growth
[Ref.: #43144]	benzoate ChEBI	-	growth
[Ref.: #43144]	beta-hydroxybutyrate ChEBI	-	growth
[Ref.: #43144]	butanol ChEBI	-	growth
[Ref.: #43144]	butyrate ChEBI	-	growth
[Ref.: #43144]	carboxymethylcellulose ChEBI	-	growth
[Ref.: #43144]	casamino acids	+	growth
[Ref.: #43144]	casein hydrolysate	+	growth
[Ref.: #43144]	cellobiose ChEBI	-	growth
[Ref.: #43144]	cellulose ChEBI	-	growth
[Ref.: #43144]	cellulose ChEBI	-	hydrolysis
[Ref.: #43144]	chitin ChEBI	-	growth
[Ref.: #43144]	citrate ChEBI	-	growth
[Ref.: #43144]	crotonate ChEBI	-	growth
[Ref.: #43144]	cysteine ChEBI	-	growth
[Ref.: #43144]	decanoate ChEBI	-	growth
[Ref.: #43144]	erythritol ChEBI	-	growth
[Ref.: #43144]	erythrulose ChEBI	-	growth
[Ref.: #43144]	esculin ChEBI	+	hydrolysis
[Ref.: #43144]	ethanol ChEBI	-	growth
[Ref.: #43144]	ethylene ChEBI	-	growth
[Ref.: #43144]	fermented rumen extract	-	growth
[Ref.: #43144]	formate ChEBI	-	growth
[Ref.: #43144]	fructose ChEBI	-	growth
[Ref.: #43144]	fucose ChEBI	+/-	growth
[Ref.: #43144]	fumarate ChEBI	-	growth
[Ref.: #43144]	galactitol ChEBI	-	growth
[Ref.: #43144]	galactose ChEBI	-	growth
[Ref.: #43144]	gelatin ChEBI	-	hydrolysis
[Ref.: #43144]	gluconate ChEBI	-	growth
[Ref.: #43144]	glucosamine ChEBI	-	growth
[Ref.: #43144]	glucose ChEBI	-	growth
[Ref.: #43144]	glucose ChEBI	-	fermentation
[Ref.: #43144]	glucuronate ChEBI	-	growth
[Ref.: #43144]	glutamate ChEBI	-	growth
[Ref.: #43144]	glutamine ChEBI	-	growth
[Ref.: #43144]	glycerol ChEBI	-	growth
[Ref.: #43144]	glycine ChEBI	-	growth
[Ref.: #43144]	glycol ChEBI	-	growth
[Ref.: #43144]	glycolate ChEBI	-	growth
[Ref.: #43144]	glyoxylate ChEBI	-	growth
[Ref.: #43144]	heptanoate ChEBI	-	growth
[Ref.: #43144]	histidine ChEBI	-	growth
[Ref.: #43144]	isobutyrate ChEBI	-	growth
[Ref.: #43144]	isocitrate ChEBI	-	growth
[Ref.: #43144]	isoleucine ChEBI	-	growth
[Ref.: #43144]	isovalerate ChEBI	-	growth
[Ref.: #43144]	lactate ChEBI	-	growth
[Ref.: #43144]	lactose ChEBI	-	growth
[Ref.: #43144]	laminarin ChEBI	-	growth
[Ref.: #43144]	leucine ChEBI	-	growth
[Ref.: #43144]	lignin ChEBI	-	growth
[Ref.: #43144]	lysine ChEBI	-	growth
[Ref.: #43144]	lyxose ChEBI	-	growth
[Ref.: #43144]	malate ChEBI	-	growth
[Ref.: #43144]	maleic acid ChEBI	-	growth
[Ref.: #43144]	malonate ChEBI	-	growth
[Ref.: #43144]	maltose ChEBI	+	growth
[Ref.: #43144]	mannitol ChEBI	-	growth
[Ref.: #43144]	mannose ChEBI	+/-	growth
[Ref.: #43144]	melezitose ChEBI	-	growth
[Ref.: #43144]	methanol ChEBI	-	growth
[Ref.: #43144]	methionine ChEBI	-	growth
[Ref.: #43144]	myo-inositol ChEBI	-	growth
[Ref.: #43144]	N-acetylgalactosamine ChEBI	-	growth
[Ref.: #43144]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #43144]	nicotinate ChEBI	-	growth
[Ref.: #43144]	nitrate ChEBI	-	reduction
[Ref.: #43144]	octanoate ChEBI	-	growth
[Ref.: #43144]	ornithine ChEBI	-	growth
[Ref.: #43144]	oxaloacetate ChEBI	-	growth
[Ref.: #43144]	pectin ChEBI	-	growth
[Ref.: #43144]	peptone	+	growth
[Ref.: #43144]	phenylalanine ChEBI	-	growth
[Ref.: #43144]	proline ChEBI	-	growth
[Ref.: #43144]	propanol ChEBI	-	growth
[Ref.: #43144]	propionate ChEBI	-	growth
[Ref.: #43144]	protocatechuate ChEBI	+	growth
[Ref.: #43144]	pyruvate ChEBI	-	growth
[Ref.: #43144]	raffinose ChEBI	-	growth
[Ref.: #43144]	rhamnose ChEBI	-	growth
[Ref.: #43144]	ribitol ChEBI	+/-	growth
[Ref.: #43144]	serine ChEBI	-	growth
[Ref.: #43144]	shikimate ChEBI	-	growth
[Ref.: #43144]	sorbitol ChEBI	-	growth
[Ref.: #43144]	sorbose ChEBI	-	growth
[Ref.: #43144]	starch ChEBI	+	growth
[Ref.: #43144]	starch ChEBI	+	hydrolysis
[Ref.: #43144]	succinamate ChEBI	-	growth
[Ref.: #43144]	sucrose ChEBI	+/-	growth
[Ref.: #43144]	tartrate ChEBI	-	growth
[Ref.: #43144]	threonine ChEBI	-	growth
[Ref.: #43144]	trehalose ChEBI	-	growth
[Ref.: #43144]	trimethoxybenzoate	-	growth
[Ref.: #43144]	tryptophan ChEBI	-	growth
[Ref.: #43144]	tween 80 ChEBI	-	growth
[Ref.: #43144]	tyrosine ChEBI	-	growth
[Ref.: #43144]	urea ChEBI	-	hydrolysis
[Ref.: #43144]	valine ChEBI	-	growth
[Ref.: #43144]	xylan ChEBI	-	growth
[Ref.: #43144]	xylan ChEBI	-	hydrolysis
[Ref.: #43144]	xylitol ChEBI	-	growth
[Ref.: #43144]	xylose ChEBI	-	growth
[Ref.: #43144]	yeast extract	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43144]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43144]	acid phosphatase	+	3.1.3.2
[Ref.: #43144]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43144]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43144]	alpha-fucosidase	+/-	3.2.1.51
[Ref.: #43144]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43144]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43144]	beta-galactosidase	+	3.2.1.23
[Ref.: #43144]	beta-glucosidase	+	3.2.1.21
[Ref.: #43144]	catalase	+	1.11.1.6
[Ref.: #43144]	cystine arylamidase	+	3.4.11.3
[Ref.: #43144]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43144]	esterase (C 4)	+
[Ref.: #43144]	esterase Lipase (C 8)	+
[Ref.: #43144]	leucine arylamidase	+	3.4.11.1
[Ref.: #43144]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43144]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43144]	trypsin	+/-	3.4.21.4
[Ref.: #43144]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43144]

Fatty acid	Percentage
C15:0 iso	59.8
C15:1 iso h / C13:0 3OH	11.4
C17:0 iso	3.6
C17:0 anteiso	3.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24411]	Sample type/isolated from	irrigated agricultural, sandy semiarid savanna soil
[Ref.: #24411]	Geographic location (country and/or sea, region)	Kavango region, Mashare (17° 53' 32.4'' S, 20° 11'15.4'' E)
[Ref.: #24411]	Country	Namibia
[Ref.: #24411]	Country ISO 3 Code	NAM
[Ref.: #24411]	Continent	Africa
[Ref.: #24411]	Geographic location	-17.8923°/20.1876°

[Ref.: #43144]	Sample type/isolated from	sandy agriculturally used old flood plain soil
[Ref.: #43144]	Geographic location (country and/or sea, region)	Mashare, Namibia
[Ref.: #43144]	Country	Namibia
[Ref.: #43144]	Country ISO 3 Code	NAM
[Ref.: #43144]	Continent	Africa
[Ref.: #43144]	Geographic location	-17.0000°/20.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Semiarid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM659878 (>99% sequence identity) for Arenimicrobium from Microbeatlas

Aquatic Samples	4
Soil Samples	188
Animal Samples	5
Plant Samples	3
Total Samples	200

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24411]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24411]	Arenimicrobium luteum strain Ac_12_G8 16S ribosomal RNA gene, partial sequence	KM659878	1521	ENA	1560324 tax ID

[Ref.: #24411]

GC-content

66.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24411]

Culture collection no.

DSM 26556, LMG 29166

[Ref.: #90936]

SI-ID 405870

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevitalea aridisoli, B. deliciosa and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from savanna soil and description of the novel family Pyrinomonadaceae.	Wust PK, Foesel BU, Geppert A, Huber KJ, Luckner M, Wanner G, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001199	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24411

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26556

#43144

Pia K. Wüst, Bärbel U. Foesel, Alicia Geppert, Katharina J. Huber, Manja Luckner, Gerhard Wanner and Jörg Overmann: Brevitalea aridisoli, B. deliciosa and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from savanna soil and description of the novel family Pyrinomonadaceae. IJSEM 66: 3355 - 3366 2016 ( DOI 10.1099/ijsem.0.001199 , PubMed 27255677 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90936

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405870.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Arenimicrobium luteum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF