Name: Arenimicrobium luteum Ac_12_G8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132622

Type strain:

Species: Arenimicrobium luteum

Strain Designation: Ac_12_G8

Culture col. no.: DSM 26556, LMG 29166

Strain history: <- P. Wüst, Leibniz-Institut DSMZ GmbH, Germany; Ac_12_G8

NCBI tax ID(s): 1560324 (species)

SI-ID 405870

DSM 26556

Special Collections

Section

Arenimicrobium luteum Ac_12_G8 is an obligate aerobe, chemoorganoheterotroph, Gram-negative bacterium that forms circular colonies and was isolated from irrigated agricultural, sandy semiarid savanna soil.

colony-forming
Gram-negative
ovoid-shaped
chemoorganoheterotroph
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Acidobacteriota*
	Class	*Blastocatellia*
	Order	*Blastocatellales*
	Family	*Arenimicrobiaceae*
	Genus	*Arenimicrobium*
	Species	**Arenimicrobium luteum**
	Full Scientific Name (LPSN)	Arenimicrobium luteum Wüst et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43144]	Gram stain	negative

[Ref.: #43144]	Cell length	1.0-2.3 µm

[Ref.: #43144]	Cell width	0.7-1.0 µm

[Ref.: #43144]	Cell shape	ovoid-shaped
[Ref.: #43144]	Cell shape	rod-shaped

[Ref.: #43144]	Motility	no

[Ref.: #43144]	Colony size	1 mm
[Ref.: #43144]	Colony color	orange-yellowish
[Ref.: #43144]	Colony shape	circular
[Ref.: #43144]	Cultivation medium used	Solid media

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43144]

Culture medium

Solid media

[Ref.: #43144]

Culture medium growth

[Ref.: #24411]

Culture medium

SSE/HD1:10 (DSMZ Medium 1426)

[Ref.: #24411]

Culture medium growth

[Ref.: #24411]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24411]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24411]	growth	28 °C
[Ref.: #43144]	optimum	32.9-37.2 °C
[Ref.: #43144]	growth	8.0-44.6 °C

	pH	Kind of pH		pH
[Ref.: #43144]			optimum	5.5-7.0
[Ref.: #43144]			growth	3.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43144]

Oxygen tolerance

obligate aerobe

[Ref.: #43144]

Nutrition type

chemoorganoheterotroph

[Ref.: #43144]	Type of spore	spore
[Ref.: #43144]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43144]		NaCl		maximum	0.25	%(w/v)
[Ref.: #43144]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43144]	1,2-butandiol ChEBI	-	growth
[Ref.: #43144]	1,2-propandiol ChEBI	-	growth
[Ref.: #43144]	2,3-butanediol ChEBI	-	growth
[Ref.: #43144]	2-hydroxybutyrate ChEBI	-	growth
[Ref.: #43144]	2-oxogluconate	-	growth
[Ref.: #43144]	2-oxoglutarate ChEBI	-	growth
[Ref.: #43144]	2-oxopentanoate ChEBI	-	growth
[Ref.: #43144]	4-hydroxybutyrate ChEBI	-	growth
[Ref.: #43144]	4-nitrophenyl beta-D-galactopyranoside hydrolysate	+	hydrolysis
[Ref.: #43144]	4-oxopentanoate ChEBI	-	growth
[Ref.: #43144]	acetate ChEBI	-	growth
[Ref.: #43144]	acetoin ChEBI	-	growth
[Ref.: #43144]	adipate ChEBI	-	growth
[Ref.: #43144]	alanine ChEBI	-	growth
[Ref.: #43144]	arabinitol ChEBI	-	growth
[Ref.: #43144]	arabinose ChEBI	-	growth
[Ref.: #43144]	arginine ChEBI	-	growth
[Ref.: #43144]	ascorbate ChEBI	-	growth
[Ref.: #43144]	asparagine ChEBI	-	growth
[Ref.: #43144]	aspartate ChEBI	-	growth
[Ref.: #43144]	benzoate ChEBI	-	growth
[Ref.: #43144]	beta-hydroxybutyrate ChEBI	-	growth
[Ref.: #43144]	butanol ChEBI	-	growth
[Ref.: #43144]	butyrate ChEBI	-	growth
[Ref.: #43144]	carboxymethylcellulose ChEBI	-	growth
[Ref.: #43144]	casamino acids	+	growth
[Ref.: #43144]	casein hydrolysate	+	growth
[Ref.: #43144]	cellobiose ChEBI	-	growth
[Ref.: #43144]	cellulose ChEBI	-	growth
[Ref.: #43144]	cellulose ChEBI	-	hydrolysis
[Ref.: #43144]	chitin ChEBI	-	growth
[Ref.: #43144]	citrate ChEBI	-	growth
[Ref.: #43144]	crotonate ChEBI	-	growth
[Ref.: #43144]	cysteine ChEBI	-	growth
[Ref.: #43144]	decanoate ChEBI	-	growth
[Ref.: #43144]	erythritol ChEBI	-	growth
[Ref.: #43144]	erythrulose ChEBI	-	growth
[Ref.: #43144]	esculin ChEBI	+	hydrolysis
[Ref.: #43144]	ethanol ChEBI	-	growth
[Ref.: #43144]	ethylene ChEBI	-	growth
[Ref.: #43144]	fermented rumen extract	-	growth
[Ref.: #43144]	formate ChEBI	-	growth
[Ref.: #43144]	fructose ChEBI	-	growth
[Ref.: #43144]	fucose ChEBI	+/-	growth
[Ref.: #43144]	fumarate ChEBI	-	growth
[Ref.: #43144]	galactitol ChEBI	-	growth
[Ref.: #43144]	galactose ChEBI	-	growth
[Ref.: #43144]	gelatin ChEBI	-	hydrolysis
[Ref.: #43144]	gluconate ChEBI	-	growth
[Ref.: #43144]	glucosamine ChEBI	-	growth
[Ref.: #43144]	glucose ChEBI	-	growth
[Ref.: #43144]	glucose ChEBI	-	fermentation
[Ref.: #43144]	glucuronate ChEBI	-	growth
[Ref.: #43144]	glutamate ChEBI	-	growth
[Ref.: #43144]	glutamine ChEBI	-	growth
[Ref.: #43144]	glycerol ChEBI	-	growth
[Ref.: #43144]	glycine ChEBI	-	growth
[Ref.: #43144]	glycol ChEBI	-	growth
[Ref.: #43144]	glycolate ChEBI	-	growth
[Ref.: #43144]	glyoxylate ChEBI	-	growth
[Ref.: #43144]	heptanoate ChEBI	-	growth
[Ref.: #43144]	histidine ChEBI	-	growth
[Ref.: #43144]	isobutyrate ChEBI	-	growth
[Ref.: #43144]	isocitrate ChEBI	-	growth
[Ref.: #43144]	isoleucine ChEBI	-	growth
[Ref.: #43144]	isovalerate ChEBI	-	growth
[Ref.: #43144]	lactate ChEBI	-	growth
[Ref.: #43144]	lactose ChEBI	-	growth
[Ref.: #43144]	laminarin ChEBI	-	growth
[Ref.: #43144]	leucine ChEBI	-	growth
[Ref.: #43144]	lignin ChEBI	-	growth
[Ref.: #43144]	lysine ChEBI	-	growth
[Ref.: #43144]	lyxose ChEBI	-	growth
[Ref.: #43144]	malate ChEBI	-	growth
[Ref.: #43144]	maleic acid ChEBI	-	growth
[Ref.: #43144]	malonate ChEBI	-	growth
[Ref.: #43144]	maltose ChEBI	+	growth
[Ref.: #43144]	mannitol ChEBI	-	growth
[Ref.: #43144]	mannose ChEBI	+/-	growth
[Ref.: #43144]	melezitose ChEBI	-	growth
[Ref.: #43144]	methanol ChEBI	-	growth
[Ref.: #43144]	methionine ChEBI	-	growth
[Ref.: #43144]	myo-inositol ChEBI	-	growth
[Ref.: #43144]	N-acetylgalactosamine ChEBI	-	growth
[Ref.: #43144]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #43144]	nicotinate ChEBI	-	growth
[Ref.: #43144]	nitrate ChEBI	-	reduction
[Ref.: #43144]	octanoate ChEBI	-	growth
[Ref.: #43144]	ornithine ChEBI	-	growth
[Ref.: #43144]	oxaloacetate ChEBI	-	growth
[Ref.: #43144]	pectin ChEBI	-	growth
[Ref.: #43144]	peptone	+	growth
[Ref.: #43144]	phenylalanine ChEBI	-	growth
[Ref.: #43144]	proline ChEBI	-	growth
[Ref.: #43144]	propanol ChEBI	-	growth
[Ref.: #43144]	propionate ChEBI	-	growth
[Ref.: #43144]	protocatechuate ChEBI	+	growth
[Ref.: #43144]	pyruvate ChEBI	-	growth
[Ref.: #43144]	raffinose ChEBI	-	growth
[Ref.: #43144]	rhamnose ChEBI	-	growth
[Ref.: #43144]	ribitol ChEBI	+/-	growth
[Ref.: #43144]	serine ChEBI	-	growth
[Ref.: #43144]	shikimate ChEBI	-	growth
[Ref.: #43144]	sorbitol ChEBI	-	growth
[Ref.: #43144]	sorbose ChEBI	-	growth
[Ref.: #43144]	starch ChEBI	+	growth
[Ref.: #43144]	starch ChEBI	+	hydrolysis
[Ref.: #43144]	succinamate ChEBI	-	growth
[Ref.: #43144]	sucrose ChEBI	+/-	growth
[Ref.: #43144]	tartrate ChEBI	-	growth
[Ref.: #43144]	threonine ChEBI	-	growth
[Ref.: #43144]	trehalose ChEBI	-	growth
[Ref.: #43144]	trimethoxybenzoate	-	growth
[Ref.: #43144]	tryptophan ChEBI	-	growth
[Ref.: #43144]	tween 80 ChEBI	-	growth
[Ref.: #43144]	tyrosine ChEBI	-	growth
[Ref.: #43144]	urea ChEBI	-	hydrolysis
[Ref.: #43144]	valine ChEBI	-	growth
[Ref.: #43144]	xylan ChEBI	-	growth
[Ref.: #43144]	xylan ChEBI	-	hydrolysis
[Ref.: #43144]	xylitol ChEBI	-	growth
[Ref.: #43144]	xylose ChEBI	-	growth
[Ref.: #43144]	yeast extract	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43144]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43144]	acid phosphatase	+	3.1.3.2
[Ref.: #43144]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43144]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43144]	alpha-fucosidase	+/-	3.2.1.51
[Ref.: #43144]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43144]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43144]	beta-galactosidase	+	3.2.1.23
[Ref.: #43144]	beta-glucosidase	+	3.2.1.21
[Ref.: #43144]	catalase	+	1.11.1.6
[Ref.: #43144]	cystine arylamidase	+	3.4.11.3
[Ref.: #43144]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43144]	esterase (C 4)	+
[Ref.: #43144]	esterase Lipase (C 8)	+
[Ref.: #43144]	leucine arylamidase	+	3.4.11.1
[Ref.: #43144]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43144]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43144]	trypsin	+/-	3.4.21.4
[Ref.: #43144]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43144]

Fatty acid	Percentage
C15:0 iso	59.8
C15:1 iso h / C13:0 3OH	11.4
C17:0 iso	3.6
C17:0 anteiso	3.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24411]	Sample type/isolated from	irrigated agricultural, sandy semiarid savanna soil
[Ref.: #24411]	Geographic location (country and/or sea, region)	Kavango region, Mashare (17° 53' 32.4'' S, 20° 11'15.4'' E)
[Ref.: #24411]	Country	Namibia
[Ref.: #24411]	Country ISO 3 Code	NAM
[Ref.: #24411]	Continent	Africa
[Ref.: #24411]	Geographic location	-17.8923°/20.1876°

[Ref.: #43144]	Sample type/isolated from	sandy agriculturally used old flood plain soil
[Ref.: #43144]	Geographic location (country and/or sea, region)	Mashare, Namibia
[Ref.: #43144]	Country	Namibia
[Ref.: #43144]	Country ISO 3 Code	NAM
[Ref.: #43144]	Continent	Africa
[Ref.: #43144]	Geographic location	-17.0000°/20.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Semiarid

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM659878 (>99% sequence identity) for Arenimicrobium from Microbeatlas

Aquatic Samples	4
Soil Samples	188
Animal Samples	5
Plant Samples	3
Total Samples	200

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24411]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24411]	Arenimicrobium luteum strain Ac_12_G8 16S ribosomal RNA gene, partial sequence	KM659878	1521	GenBank ENA	1560324 tax ID

[Ref.: #24411]

GC-content

66.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24411]

Culture collection no.

DSM 26556, LMG 29166

[Ref.: #90936]

SI-ID 405870

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevitalea aridisoli, B. deliciosa and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from savanna soil and description of the novel family Pyrinomonadaceae.	Wust PK, Foesel BU, Geppert A, Huber KJ, Luckner M, Wanner G, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001199	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24411

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26556

#43144

Pia K. Wüst, Bärbel U. Foesel, Alicia Geppert, Katharina J. Huber, Manja Luckner, Gerhard Wanner and Jörg Overmann: Brevitalea aridisoli, B. deliciosa and Arenimicrobium luteum, three novel species of Acidobacteria subdivision 4 (class Blastocatellia) isolated from savanna soil and description of the novel family Pyrinomonadaceae. IJSEM 66: 3355 - 3366 2016 ( DOI 10.1099/ijsem.0.001199 , PubMed 27255677 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90936

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405870.1 )

* These data were automatically processed and therefore are not curated

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