Micromonospora ureilytica (DSM 101692, CECT 9022, GUI 23)

Name: Micromonospora ureilytica (DSM 101692, CECT 9022, GUI 23)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132606

Type strain

Culture col. no. DSM 101692 CECT 9022 GUI 23

NCBI tax ID(s) 709868

Special Collections DSMZ Literature strains

History <- M.E. Trujillo, Univ. de Salamanca, Microbiologia y Genetica, Salamanca, Spain; GUI23 <- L. Carro, Univ. de Salamanca

Links

Micromonospora ureilytica DSM 101692 is an aerobe, chemoorganotroph, spore-forming bacterium that builds a substrate mycelium and was isolated from Nitrogen fixing nodule from Pisum sativum.

spore-forming Gram-positive aerobe chemoorganotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 401796

CECT 9022,DSM 101692

@ref 20215

Last LPSN update 2026-02-09 11:31:45

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora ureilytica

Full scientific name Micromonospora ureilytica Carro et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
43106	positive
125439	positive	99.9
125439		90.9
125438	positive	91.679

Multicellular morphology

@ref	Forms multicellular complex	Complex name	Complex color	Medium name	Further description
43106		substrate mycelium	light to deep orange	SA1	extensively branched and non-fragmented hyphae

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
24395	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
43106	ISP 2
43106	ISP 3
43106	YMA
24395	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24395	positive	growth	28
43106	positive	optimum	28
43106	positive	growth	20-37

Culture pH

@ref	Ability	Type	PH
43106	positive	growth	7-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43106	aerobe
125438	aerobe	90.006
125439	obligate aerobe	99.7

Nutrition type

43106

Typechemoorganotroph

Spore formation

@ref	Spore description	Spore formation	Confidence
43106	Single, non-motile, smooth-surfaced spores, at the end of the hyphal tips
125438			92.888

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43106	NaCl	positive	growth	1 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43106	48095 ChEBI	(-)-D-fructose	+	carbon source
43106	17521 ChEBI	(-)-quinic acid	-	carbon source
43106	18305 ChEBI	arbutin	+	degradation
43106		casein	+	degradation
43106	17057 ChEBI	cellobiose	+	carbon source
43106	12936 ChEBI	D-galactose	+	carbon source
43106	18024 ChEBI	D-galacturonic acid	-	carbon source
43106	17634 ChEBI	D-glucose	+	carbon source
43106	16024 ChEBI	D-mannose	+	carbon source
43106	65327 ChEBI	D-xylose	+	carbon source
43106	17113 ChEBI	erythritol	-	carbon source
43106	4853 ChEBI	esculin	+	degradation
43106	5291 ChEBI	gelatin	+	degradation
43106	24265 ChEBI	gluconate	+	carbon source
43106	17859 ChEBI	glutaric acid	-	carbon source
43106	16977 ChEBI	L-alanine	-	carbon source
43106	30849 ChEBI	L-arabinose	+	carbon source
43106	16467 ChEBI	L-arginine	-	carbon source
43106	15971 ChEBI	L-histidine	-	carbon source
43106	18019 ChEBI	L-lysine	+	carbon source
43106	17203 ChEBI	L-proline	-	carbon source
43106	17115 ChEBI	L-serine	-	carbon source
43106	17266 ChEBI	L-sorbose	-	carbon source
43106	16414 ChEBI	L-valine	-	carbon source
43106	17306 ChEBI	maltose	+	carbon source
43106	6731 ChEBI	melezitose	-	carbon source
43106	28053 ChEBI	melibiose	+	carbon source
43106	17272 ChEBI	propionate	-	carbon source
43106	16634 ChEBI	raffinose	+	carbon source
43106	26546 ChEBI	rhamnose	-	carbon source
43106	17814 ChEBI	salicin	-	carbon source
43106	41865 ChEBI	sebacic acid	-	carbon source
43106	30911 ChEBI	sorbitol	-	carbon source
43106	28017 ChEBI	starch	-	degradation
43106	28017 ChEBI	starch	-	carbon source
43106	17992 ChEBI	sucrose	+	carbon source
43106	27082 ChEBI	trehalose	+	carbon source
43106	53424 ChEBI	tween 20	+	degradation
43106	53426 ChEBI	tween 80	+	degradation
43106	18186 ChEBI	tyrosine	+	degradation
43106	18186 ChEBI	tyrosine	+	carbon source
43106	16199 ChEBI	urea	+	degradation
43106	37166 ChEBI	xylan	+	degradation
43106	17151 ChEBI	xylitol	-	carbon source

Enzymes

@ref	Value	Activity	Ec
43106	acid phosphatase	-	3.1.3.2
43106	alkaline phosphatase	+	3.1.3.1
43106	alpha-chymotrypsin	+	3.4.21.1
43106	alpha-fucosidase	-	3.2.1.51
43106	alpha-galactosidase	-	3.2.1.22
43106	alpha-glucosidase	-	3.2.1.20
43106	alpha-mannosidase	-	3.2.1.24
43106	beta-galactosidase	+	3.2.1.23
43106	beta-glucosidase	-	3.2.1.21
43106	beta-glucuronidase	-	3.2.1.31
43106	catalase	+	1.11.1.6
43106	cystine arylamidase	+	3.4.11.3
43106	cytochrome oxidase	+	1.9.3.1
43106	esterase (C 4)	+
43106	leucine arylamidase	+	3.4.11.1
43106	lipase (C 14)	-
43106	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43106	naphthol-AS-BI-phosphohydrolase	+
43106	trypsin	+	3.4.21.4
43106	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture
24395	Nitrogen fixing nodule from Pisum sativum	Pisum sativum	Zamora, Canizal	Spain	ESP	Europe	40.7939	-5.6656 40.7939/-5.6656
43106	root nodule of Pisum sativum		Cañizal, Zamora	Spain	ESP	Europe			yeast mannitol agar (YMA)

Taxonmaps

69479

Global distribution of 16S sequence FN658641 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	11
Soil Samples	33
Animal Samples	7
Plant Samples	2
Total Samples	53

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24395	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1575176v1 assembly for Micromonospora ureilytica DSM 101692	contig	GCA_015751765	709868.3	2880489317	709868	75.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24395	Micromonospora sp. GUI23 partial 16S rRNA gene, isolate GUI23	FN658641	1452		709868

GC content

@ref	GC-content (mol%)	Method
43106	70.7	Thermal denaturation, fluorometry
24395	70.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora ureilytica DSM 101692
NCBI: GCA_015751765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.20	no
125439	motility	BacteriaNetⓘ	no	90.90	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Micromonospora ureilytica strain DSM 101692
PATRIC: 709868.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.68	yes
125438	anaerobic	anaerobicⓘ	no	94.89	no
125438	spore-forming	spore-formingⓘ	yes	92.89	yes
125438	aerobic	aerobicⓘ	yes	90.01	yes
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	87.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching.	Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001614	2017
Phylogeny	Micromonospora ureilytica sp. nov., Micromonospora noduli sp. nov. and Micromonospora vinacea sp. nov., isolated from Pisum sativum nodules.	Carro L, Riesco R, Sproer C, Trujillo ME	Int J Syst Evol Microbiol	10.1099/ijsem.0.001231	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24395	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101692
#43106	Lorena Carro, Raúl Riesco, Cathrin Spröer, Martha E. Trujillo: Micromonospora ureilytica sp. nov., Micromonospora noduli sp. nov. and Micromonospora vinacea sp. nov., isolated from Pisum sativum nodules. IJSEM 66: 3509 - 3514 2016 ( DOI 10.1099/ijsem.0.001231 , PubMed 27282917 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora ureilytica (DSM 101692, CECT 9022, GUI 23)

Name and taxonomic classification

Morphology

Cell morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_015751765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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