Name: Micromonospora noduli DSM 101694
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132607

Type strain:

Species: Micromonospora noduli

Culture col. no.: DSM 101694, CECT 9020, GUI 43

Strain history: <- A. Trujillo, Depart. Microbiol. y Gen., Univ. Salamanca, Spain; GUI43

NCBI tax ID(s): 709876 (species)

SI-ID 401228

DSM 101694

Section

Micromonospora noduli DSM 101694 is an aerobe, chemoorganotroph, spore-forming bacterium that builds a substrate mycelium and was isolated from nitrogen fixing nodule from Pisum sativum.

Gram-positive
spore-forming
aerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora noduli**
	Full Scientific Name (LPSN)	Micromonospora noduli Carro et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43106]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43106]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.642

[Ref.: #43106]	Multicellular complex forming ability	yes
[Ref.: #43106]	Multicellular complex name	Substrate mycelium
[Ref.: #43106]	Multicellular complex color	beige to dark brown
[Ref.: #43106]	Medium Name (multicellularity)	SA1
[Ref.: #43106]	Multicellular complex further description	extensively branched and non-fragmented hyphae

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

YMA

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Culture medium growth

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Culture medium

SA1

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Culture medium growth

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Culture medium

IPS 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #24396]	growth	28 °C
[Ref.: #43106]	optimum	28 °C
[Ref.: #43106]	growth	12-37 °C

[Ref.: #24396]	Temperature range	mesophilic
[Ref.: #43106]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43106]			growth	7-9

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Nutrition type

chemoorganotroph

[Ref.: #43106]	Spore description	Single, non-motile, smooth-surfaced spores, at the end of the hyphal tips
[Ref.: #43106]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43106]		NaCl		growth	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43106]	(-)-D-fructose ChEBI	+	carbon source
[Ref.: #43106]	(-)-quinic acid ChEBI	-	carbon source
[Ref.: #43106]	alanine ChEBI	-	carbon source
[Ref.: #43106]	arbutin ChEBI	+	degradation
[Ref.: #43106]	casein	+	degradation
[Ref.: #43106]	cellobiose ChEBI	+	carbon source
[Ref.: #43106]	D-galactose ChEBI	+	carbon source
[Ref.: #43106]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #43106]	D-glucose ChEBI	+	carbon source
[Ref.: #43106]	D-mannose ChEBI	+	carbon source
[Ref.: #43106]	D-xylose ChEBI	+	carbon source
[Ref.: #43106]	erythritol ChEBI	-	carbon source
[Ref.: #43106]	esculin ChEBI	+	degradation
[Ref.: #43106]	gelatin ChEBI	+	degradation
[Ref.: #43106]	gluconate ChEBI	+	carbon source
[Ref.: #43106]	glutaric acid ChEBI	-	carbon source
[Ref.: #43106]	L-arabinose ChEBI	+	carbon source
[Ref.: #43106]	L-arginine ChEBI	-	carbon source
[Ref.: #43106]	L-histidine ChEBI	+	carbon source
[Ref.: #43106]	L-lysine ChEBI	-	carbon source
[Ref.: #43106]	L-proline ChEBI	-	carbon source
[Ref.: #43106]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43106]	L-serine ChEBI	-	carbon source
[Ref.: #43106]	L-sorbose ChEBI	-	carbon source
[Ref.: #43106]	L-valine ChEBI	-	carbon source
[Ref.: #43106]	maltose ChEBI	+	carbon source
[Ref.: #43106]	melezitose ChEBI	-	carbon source
[Ref.: #43106]	melibiose ChEBI	+	carbon source
[Ref.: #43106]	propionate ChEBI	-	carbon source
[Ref.: #43106]	raffinose ChEBI	+	carbon source
[Ref.: #43106]	salicin ChEBI	-	carbon source
[Ref.: #43106]	sorbitol ChEBI	-	carbon source
[Ref.: #43106]	starch ChEBI	+	degradation
[Ref.: #43106]	starch ChEBI	+	carbon source
[Ref.: #43106]	sucrose ChEBI	+	carbon source
[Ref.: #43106]	trehalose ChEBI	+	carbon source
[Ref.: #43106]	tween 20 ChEBI	-	degradation
[Ref.: #43106]	tween 80 ChEBI	+	degradation
[Ref.: #43106]	tyrosine ChEBI	-	degradation
[Ref.: #43106]	tyrosine ChEBI	-	carbon source
[Ref.: #43106]	urea ChEBI	-	degradation
[Ref.: #43106]	xylan ChEBI	+	degradation
[Ref.: #43106]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43106]	acid phosphatase	-	3.1.3.2
[Ref.: #43106]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43106]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43106]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43106]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43106]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43106]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43106]	beta-galactosidase	+	3.2.1.23
[Ref.: #43106]	beta-glucosidase	-	3.2.1.21
[Ref.: #43106]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43106]	catalase	+	1.11.1.6
[Ref.: #43106]	cystine arylamidase	+	3.4.11.3
[Ref.: #43106]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43106]	esterase (C 4)	+
[Ref.: #43106]	leucine arylamidase	+	3.4.11.1
[Ref.: #43106]	lipase (C 14)	-
[Ref.: #43106]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43106]	trypsin	+	3.4.21.4
[Ref.: #43106]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24396]	Sample type/isolated from	nitrogen fixing nodule from Pisum sativum
[Ref.: #24396]	Host species	Pisum sativum
[Ref.: #24396]	Geographic location (country and/or sea, region)	Zamora, Canizal
[Ref.: #24396]	Country	Spain
[Ref.: #24396]	Country ISO 3 Code	ESP
[Ref.: #24396]	Continent	Europe
[Ref.: #24396]	Geographic location	40.7939°/-5.6656°

[Ref.: #43106]	Sample type/isolated from	root nodules of Pisum sativum
[Ref.: #43106]	Geographic location (country and/or sea, region)	Cañizal, Zamora
[Ref.: #43106]	Country	Spain
[Ref.: #43106]	Country ISO 3 Code	ESP
[Ref.: #43106]	Continent	Europe
[Ref.: #43106]	Enrichment culture	yeast mannitol agar (YMA)
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

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Global distribution of 16S sequence FN658649 (>99% sequence identity) for Micromonospora from Microbeatlas

Aquatic Samples	161
Soil Samples	1017
Animal Samples	219
Plant Samples	22
Total Samples	1419

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24396]	Micromonospora sp. GUI43 partial 16S rRNA gene, isolate GUI43	FN658649	1440	ENA	709876 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora noduli strain GUI43	709876.6	wgs	PATRIC	709876 tax ID	*

[Ref.: #43106]	GC-content	71.3 mol%	Thermal denaturation, fluorometry
[Ref.: #24396]	GC-content	71.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Micromonospora noduli strain GUI43 PATRIC: 709876.8
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora noduli strain GUI43 PATRIC: 709876.6
[Ref.: #69480]	gram-positive	yes	91.008	yes
[Ref.: #69480]	anaerobic	no	99.35	no
[Ref.: #69480]	halophile	no	94.51	no
[Ref.: #69480]	spore-forming	yes	95.069	no
[Ref.: #69480]	glucose-util	yes	88.889	no
[Ref.: #69480]	thermophile	no	98.784	yes
[Ref.: #69480]	flagellated	no	97.476	yes
[Ref.: #69480]	aerobic	yes	96.214	no
[Ref.: #69480]	glucose-ferment	no	90.911	no
[Ref.: #69480]	motile	no	92.661	no

Availability in culture collections External links

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Culture collection no.

DSM 101694, CECT 9020, GUI 43

[Ref.: #90922]

SI-ID 401228

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Defining the Species Micromonospora saelicesensis and Micromonospora noduli Under the Framework of Genomics.	Riesco R, Carro L, Roman-Ponce B, Prieto C, Blom J, Klenk HP, Normand P, Trujillo ME	Front Microbiol	10.3389/fmicb.2018.01360	2018	*
Phylogeny	Micromonospora parathelypteridis sp. nov., an endophytic actinomycete with antifungal activity isolated from the root of Parathelypteris beddomei (Bak.) Ching.	Zhao S, Liu C, Zheng W, Ma Z, Cao T, Zhao J, Yan K, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.001614	2017	*
Phylogeny	Micromonospora ureilytica sp. nov., Micromonospora noduli sp. nov. and Micromonospora vinacea sp. nov., isolated from Pisum sativum nodules.	Carro L, Riesco R, Sproer C, Trujillo ME	Int J Syst Evol Microbiol	10.1099/ijsem.0.001231	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24396

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101694

#43106

Lorena Carro, Raúl Riesco, Cathrin Spröer, Martha E. Trujillo: Micromonospora ureilytica sp. nov., Micromonospora noduli sp. nov. and Micromonospora vinacea sp. nov., isolated from Pisum sativum nodules. IJSEM 66: 3509 - 3514 2016 ( DOI 10.1099/ijsem.0.001231 , PubMed 27282917 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90922

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401228.1 )

* These data were automatically processed and therefore are not curated

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Micromonospora noduli strain GUI43

Micromonospora noduli strain GUI43

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