Name: Streptobacillus ratti OGS16
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132487

Type strain:

Species: Streptobacillus ratti

Strain Designation: OGS16

Culture col. no.: DSM 101843, JCM 31098, CIP 110950

Strain history: CIP <- 2015, T. Eisenberg, LHL, Giessen, Germany: strain OGS16

NCBI tax ID(s): 1720557 (species)

SI-ID 398595

DSM 101843

Special Collections

Section

Streptobacillus ratti OGS16 is a Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from oral cavity of an asymptomatic feral black rat .

colony-forming
Gram-negative
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Fusobacteriota*
	Class	*Fusobacteriia*
	Order	*Fusobacteriales*
	Family	*Leptotrichiaceae*
	Genus	*Streptobacillus*
	Species	**Streptobacillus ratti**
	Full Scientific Name (LPSN)	Streptobacillus ratti Eisenberg et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43692]	Gram stain	negative
[Ref.: #122145]	Gram stain	negative

[Ref.: #43692]	Cell length	0.45-0.1 µm

[Ref.: #43692]	Cell width	0.83-0.08 µm

[Ref.: #43692]	Cell shape	rod-shaped
[Ref.: #122145]	Cell shape	rod-shaped

[Ref.: #43692]	Motility	no
[Ref.: #122145]	Motility	no

[Ref.: #43692]	Type of hemolysis	alpha
[Ref.: #43692]	Hemolysis ability	1
[Ref.: #43692]	Colony size	0.1-0.4 mm
[Ref.: #43692]	Colony color	dry, slightly opaque, butyraceous
[Ref.: #43692]	Colony shape	circular
[Ref.: #43692]	Cultivation medium used	SBA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43692]

Culture medium

SBA

[Ref.: #43692]

Culture medium growth

[Ref.: #24276]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #24276]

Culture medium growth

[Ref.: #24276]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24276]

Culture medium composition

expand / minimize

[Ref.: #122145]

Culture medium

CIP Medium 45

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #24276]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43692]

Ability of spore formation

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43692]		nitrate ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #43692]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43692]	acid phosphatase	-	3.1.3.2
[Ref.: #43692]	alkaline phosphatase	-	3.1.3.1
[Ref.: #43692]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43692]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43692]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43692]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43692]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43692]	beta-galactosidase	-	3.2.1.23
[Ref.: #43692]	beta-glucosidase	-	3.2.1.21
[Ref.: #43692]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43692]	catalase	-	1.11.1.6
[Ref.: #43692]	cystine arylamidase	-	3.4.11.3
[Ref.: #43692]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43692]	esterase (C 4)	-
[Ref.: #43692]	esterase Lipase (C 8)	+
[Ref.: #43692]	leucine arylamidase	-	3.4.11.1
[Ref.: #43692]	lipase (C 14)	-
[Ref.: #43692]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43692]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43692]	trypsin	-	3.4.21.4
[Ref.: #43692]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24276]	Sample type/isolated from	oral cavity of an asymptomatic feral black rat (Rattus rattus)
[Ref.: #24276]	Host species	Rattus rattus
[Ref.: #24276]	Geographic location (country and/or sea, region)	Chiba, Ikari Corporation
[Ref.: #24276]	Country	Japan
[Ref.: #24276]	Country ISO 3 Code	JPN
[Ref.: #24276]	Continent	Asia

[Ref.: #43692]	Sample type/isolated from	Oral cavity of an asymptomatic black rat (Rattus rattus)
[Ref.: #43692]	Geographic location (country and/or sea, region)	Japan
[Ref.: #43692]	Country	Japan
[Ref.: #43692]	Country ISO 3 Code	JPN
[Ref.: #43692]	Continent	Asia
[Ref.: #43692]	Isolation date	2007

[Ref.: #67770]	Sample type/isolated from	Oral cavity of an asymptomatic black rat (Rattus rattus)
[Ref.: #67770]	Host species	Rattus rattus

[Ref.: #122145]	Sample type/isolated from	Animal, Oral swab from a black rat, Rattus rattus
[Ref.: #122145]	Country	Japan
[Ref.: #122145]	Country ISO 3 Code	JPN
[Ref.: #122145]	Continent	Asia
[Ref.: #122145]	Isolation date	2007-01-02
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Oral cavity and airways	-
#Infection	#Patient	#Swab

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR001922 (>99% sequence identity) for Streptobacillus ratti from Microbeatlas

Aquatic Samples	141
Soil Samples	2
Animal Samples	165
Plant Samples
Total Samples	308

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #122145]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24276]	Streptobacillus ratti strain OGS16 16S ribosomal RNA gene, partial sequence	KR001922	1482	GenBank ENA	1720557 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptobacillus ratti OGS16	GCA_001891165	contig	GenBank ENA	1720557 tax ID
[Ref.: #66792]	Streptobacillus ratti OGS16	2837113719	draft	JGI IMG/M	1720557 tax ID	*

[Ref.: #24276]

GC-content

25.9 mol%

Availability in culture collections External links

[Ref.: #24276]

Culture collection no.

DSM 101843, JCM 31098, CIP 110950

[Ref.: #90817]

SI-ID 398595

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar).	Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001050	2016	*
Phylogeny	Streptobacillus ratti sp. nov., isolated from a black rat (Rattus rattus).	Eisenberg T, Imaoka K, Kimura M, Glaeser SP, Ewers C, Semmler T, Rau J, Nicklas W, Tanikawa T, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000869	2015	*
Phylogeny	Caviibacter abscessus gen. nov., sp. nov., a member of the family Leptotrichiaceae isolated from guinea pigs (Cavia porcellus).	Eisenberg T, Glaeser SP, Ewers C, Semmler T, Drescher B, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.000922	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24276

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101843

#43692

Tobias Eisenberg, Koichi Imaoka, Masanobu Kimura, Stefanie P. Glaeser, Christa Ewers, Torsten Semmler, Jo¨rg Rau, Werner Nicklas, Tsutomu Tanikawa, Peter Kämpfer: Streptobacillus ratti sp. nov., isolated from a black rat (Rattus rattus). IJSEM 66: 1620 - 1626 2016 ( DOI 10.1099/ijsem.0.000869 , PubMed 26705259 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90817

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398595.1 )

#122145 Collection of Institut Pasteur ; Curators of the CIP; CIP 110950
* These data were automatically processed and therefore are not curated

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