Name: Thermogladius calderae 1633
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132428

Type strain:

Species: Thermogladius calderae

Strain Designation: 1633

Culture col. no.: DSM 22663, VKM B-2946

Strain history: <- T. Kochetkova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 1633 <- T. Kochetkova {2008}

NCBI tax ID(s): 1200300 (species)

SI-ID 402846

DSM 22663

Section

Thermogladius calderae 1633 is an obligate anaerobe, organoheterotroph, hyperthermophilic archaeon that was isolated from mixed water and black mud from a freshwater hot spring.

coccus-shaped
motile
hyperthermophilic
obligate anaerobe
organoheterotroph
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Desulfurococcales*
	Family	*Desulfurococcaceae*
	Genus	*Thermogladius*
	Species	**Thermogladius calderae**
	Full Scientific Name (LPSN)	Thermogladius calderae Kochetkova et al. 2016

Synonym

"Thermogladius cellulolyticus"

Information on morphological and physiological properties Morphology

[Ref.: #43763]	Cell length	0.5-0.9 nm

[Ref.: #43763]	Cell shape	coccus-shaped

[Ref.: #43763]	Motility	yes

[Ref.: #43763]	Flagellum arrangement	monotrichous

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24217]

Culture medium

CARBOXYDOTHERMUS MEDIUM (DSMZ Medium 507)

[Ref.: #24217]

Culture medium growth

[Ref.: #24217]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24217]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24217]	growth	85 °C
[Ref.: #43763]	growth	80-95 °C
[Ref.: #43763]	optimum	84 °C

[Ref.: #24217]	Temperature range	hyperthermophilic
[Ref.: #43763]	Temperature range	hyperthermophilic

	pH	Kind of pH		pH
[Ref.: #43763]			optimum	7.1
[Ref.: #43763]			growth	6.5-8.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43763]

Oxygen tolerance

obligate anaerobe

[Ref.: #43763]

Nutrition type

organoheterotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43763]		NaCl		growth	0-2.5	g/L

[Ref.: #43763]	Observation	Sulfur stimulates growth
[Ref.: #43763]	Observation	No growth on kreatin or amorphous cellulose

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43763]	agarose ChEBI	-	growth
[Ref.: #43763]	beef extract	+	growth
[Ref.: #43763]	carboxymethylcellulose ChEBI	+	growth
[Ref.: #43763]	cellobiose ChEBI	+	growth
[Ref.: #43763]	cellulose ChEBI	+	fermentation
[Ref.: #43763]	cellulose ChEBI	+	growth
[Ref.: #43763]	chitin ChEBI	-	growth
[Ref.: #43763]	ethanol ChEBI	-	growth
[Ref.: #43763]	formate ChEBI	-	growth
[Ref.: #43763]	fructose ChEBI	-	growth
[Ref.: #43763]	fumarate ChEBI	-	growth
[Ref.: #43763]	glucose ChEBI	-	growth
[Ref.: #43763]	glycerol ChEBI	-	growth
[Ref.: #43763]	lactate ChEBI	-	growth
[Ref.: #43763]	lactose ChEBI	-	growth
[Ref.: #43763]	maltose ChEBI	-	growth
[Ref.: #43763]	methanol ChEBI	-	growth
[Ref.: #43763]	peptone	+	growth
[Ref.: #43763]	pyruvate ChEBI	-	growth
[Ref.: #43763]	starch ChEBI	-	growth
[Ref.: #43763]	sucrose ChEBI	-	growth
[Ref.: #43763]	xylan ChEBI	-	growth
[Ref.: #43763]	xylose ChEBI	-	growth
[Ref.: #43763]	yeast extract	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic resistance	Concentration
[Ref.: #43763]	chloramphenicol ChEBI	yes	100	µg/mL
[Ref.: #43763]	kanamycin ChEBI	yes	100	µg/mL
[Ref.: #43763]	penicillin ChEBI	yes	100	µg/mL

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24217]	Sample type/isolated from	mixed water and black mud from a freshwater hot spring
[Ref.: #24217]	Geographic location (country and/or sea, region)	Kamchatka Peninsula, Uzon Caldera, West Thermal Field (54° 30.047' N 159° 56.851' E)
[Ref.: #24217]	Country	Russia
[Ref.: #24217]	Country ISO 3 Code	RUS
[Ref.: #24217]	Continent	Asia
[Ref.: #24217]	Geographic location	54.5008°/159.9480°

[Ref.: #43763]	Sample type/isolated from	Mixed water and black mud from a freshwater terrestrial hot spring
[Ref.: #43763]	Geographic location (country and/or sea, region)	Uzon Caldera (Kamchatka Peninsula)
[Ref.: #43763]	Country	Russia
[Ref.: #43763]	Country ISO 3 Code	RUS
[Ref.: #43763]	Continent	Asia
[Ref.: #43763]	Geographic location	54.5000°/159.9330°
* marker position based on {}

Isolation sources categories

#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Freshwater
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Thermal spring

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24217]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermogladius calderae 1633	GCA_000264495	complete	GenBank	1184251 tax ID	*
[Ref.: #66792]	Thermogladius calderae 1633	2521172705	complete	JGI IMG/M	1184251 tax ID	*

[Ref.: #24217]	GC-content	55.64 mol%	sequence analysis
[Ref.: #43763]	GC-content	55.64 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermogladius calderae 1633 1633 NCBI: GCA_000264495.1
[Ref.: #69480]	motile	no	70.199	no
[Ref.: #69480]	flagellated	no	91.955	yes
[Ref.: #69480]	gram-positive	no	96.579	no
[Ref.: #69480]	anaerobic	yes	99.436	yes
[Ref.: #69480]	aerobic	no	96.992	no
[Ref.: #69480]	halophile	no	89.784	no
[Ref.: #69480]	spore-forming	no	97.617	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	78.371	yes
[Ref.: #69480]	glucose-ferment	no	57.952	no

Availability in culture collections External links

[Ref.: #24217]

Culture collection no.

DSM 22663, VKM B-2946

[Ref.: #90767]

SI-ID 402846

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermogladius calderae gen. nov., sp. nov., an anaerobic, hyperthermophilic crenarchaeote from a Kamchatka hot spring.	Kochetkova TV, Kublanov IV, Toshchakov SV, Osburn MR, Novikov AA, Bonch-Osmolovskaya EA, Perevalova AA	Int J Syst Evol Microbiol	10.1099/ijsem.0.000916	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24217

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22663

#43763

Tatiana V. Kochetkova, Ilya V. Kublanov, Stepan V. Toshchakov, Magdalena R. Osburn, Andrei A. Novikov, Elizaveta A. Bonch-Osmolovskaya, Anna A. Perevalova: Thermogladius calderae gen. nov., sp. nov., an anaerobic, hyperthermophilic crenarchaeote from a Kamchatka hot spring. IJSEM 66: 1407 - 1412 2016 ( DOI 10.1099/ijsem.0.000916 , PubMed 26801582 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90767

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402846.1 )

* These data were automatically processed and therefore are not curated

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Thermogladius calderae 1633 1633

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