Name: Nonomuraea gerenzanensis DSM 100948
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132378

Type strain:

Species: Nonomuraea gerenzanensis

Culture col. no.: DSM 100948, ATCC 39727

Strain history: <- G. L. Marcone, University of Insubria, Italy <- ATCC; ATCC 39727

NCBI tax ID(s): 93944 (species)

SI-ID 41572

ATCC 39727, DSM 100948

Special Collections

Section

Nonomuraea gerenzanensis DSM 100948 is an aerobe, Gram-positive bacterium that produces antibiotic compounds and was isolated from Indian soil.

antibiotic compound production
Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Nonomuraea*
	Species	**Nonomuraea gerenzanensis**
	Full Scientific Name (LPSN)	Nonomuraea gerenzanensis Dalmastri et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43806]	Gram stain	positive

[Ref.: #43806]	Motility	no

Multimedia content

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Caption:

Medium 553 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #24167]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24167]	growth	28 °C
[Ref.: #43806]	growth	22-40 °C
[Ref.: #43806]	optimum	28-37 °C

	pH	Kind of pH		pH
[Ref.: #43806]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Name of produced compound

glycopeptide antibiotics

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43806]		NaCl		growth	0-3	%(w/v)

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Observation

Production of a significant amount of the glycopeptide antibiotic A40926 is characteristic.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43806]	casein	+	degradation
[Ref.: #43806]	cellobiose ChEBI	+	carbon source
[Ref.: #43806]	cellulose ChEBI	-	degradation
[Ref.: #43806]	D-fructose ChEBI	+	carbon source
[Ref.: #43806]	D-galactose ChEBI	+	carbon source
[Ref.: #43806]	D-mannitol ChEBI	+	carbon source
[Ref.: #43806]	D-mannose ChEBI	+	carbon source
[Ref.: #43806]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43806]	D-xylose ChEBI	+	carbon source
[Ref.: #43806]	elastin ChEBI	+	degradation
[Ref.: #43806]	gelatin ChEBI	+	hydrolysis
[Ref.: #43806]	L-arabinose ChEBI	+	carbon source
[Ref.: #43806]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43806]	L-tyrosine ChEBI	+	degradation
[Ref.: #43806]	lactose ChEBI	+	carbon source
[Ref.: #43806]	maltose ChEBI	+	carbon source
[Ref.: #43806]	myo-inositol ChEBI	-	carbon source
[Ref.: #43806]	nitrate ChEBI	+	reduction
[Ref.: #43806]	raffinose ChEBI	+	carbon source
[Ref.: #43806]	starch ChEBI	-	hydrolysis
[Ref.: #43806]	succinate ChEBI	+	carbon source
[Ref.: #43806]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43806]		hydrogen sulfide ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24167]	Sample type/isolated from	Indian soil
[Ref.: #24167]	Country	India
[Ref.: #24167]	Country ISO 3 Code	IND
[Ref.: #24167]	Continent	Asia

[Ref.: #43806]	Sample type/isolated from	A soil sample collected in India
[Ref.: #43806]	Geographic location (country and/or sea, region)	India
[Ref.: #43806]	Country	India
[Ref.: #43806]	Country ISO 3 Code	IND
[Ref.: #43806]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence AJ582011 (>99% sequence identity) for Nonomuraea from Microbeatlas

Aquatic Samples	63
Soil Samples	419
Animal Samples	177
Plant Samples	81
Total Samples	740

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24167]	Nonomuraea sp. ATCC 39727 partial 16S rRNA gene, strain ATCC 39727	AJ582011	1459	GenBank ENA	93944 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nonomuraea gerenzanensis ATCC 39727	651716751	draft	JGI IMG/M	93944 tax ID	*

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GC-content

71.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

DSM 100948, ATCC 39727

[Ref.: #90722]

SI-ID 41572

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comprehensive genome analysis of a novel actinobacterium with high potential for biotechnological applications, Nonomuraea aridisoli sp. nov., isolated from desert soil.	Saygin H, Ay H, Guven K, Cetin D, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-021-01654-z	2021	*
Phylogeny	Nonomuraea terrae sp. nov., isolated from arid soil.	Ay H	Arch Microbiol	10.1007/s00203-020-01941-9	2020	*
Biotechnology	New Molecular Tools for Regulation and Improvement of A40926 Glycopeptide Antibiotic Production in Nonomuraea gerenzanensis ATCC 39727.	Yushchuk O, Andreo-Vidal A, Marcone GL, Bibb M, Marinelli F, Binda E	Front Microbiol	10.3389/fmicb.2020.00008	2020	*
Phylogeny	Nonomuraea lycopersici sp. nov., isolated from the root of tomato plants (Solanum lycopersicum L.).	Zheng W, Zhao J, Li D, Jiang H, Han L, Zhao X, Chen Y, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-017-1012-6	2018	*
Transcriptome	The complete 12 Mb genome and transcriptome of Nonomuraea gerenzanensis with new insights into its duplicated "magic" RNA polymerase.	D'Argenio V, Petrillo M, Pasanisi D, Pagliarulo C, Colicchio R, Tala A, de Biase MS, Zanfardino M, Scolamiero E, Pagliuca C, Gaballo A, Cicatiello AG, Cantiello P, Postiglione I, Naso B, Boccia A, Durante M, Cozzuto L, Salvatore P, Paolella G, Salvatore F, Alifano P	Sci Rep	10.1038/s41598-016-0025-0	2016	*
Phylogeny	Classification of Nonomuraea sp. ATCC 39727, an actinomycete that produces the glycopeptide antibiotic A40926, as Nonomuraea gerenzanensis sp. nov.	Dalmastri C, Gastaldo L, Marcone GL, Binda E, Congiu T, Marinelli F	Int J Syst Evol Microbiol	10.1099/ijsem.0.000810	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24167

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100948

#43806

Claudia Dalmastri, Luciano Gastaldo, Giorgia Letizia Marcone, Elisa Binda, Terenzio Congiu, Flavia Marinelli: Classification of Nonomuraea sp. ATCC 39727, an actinomycete that produces the glycopeptide antibiotic A40926, as Nonomuraea gerenzanensis sp. nov.. IJSEM 66: 912 - 921 2016 ( DOI 10.1099/ijsem.0.000810 , PubMed 26944798 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90722

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41572.1 )

* These data were automatically processed and therefore are not curated

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