Strain identifier
BacDive ID: 132378
Type strain: 
Species: Nonomuraea gerenzanensis
Strain history: <- G. L. Marcone, University of Insubria, Italy <- ATCC; ATCC 39727
NCBI tax ID(s): 93944 (species)
version 8.1 (current version)
General
@ref: 24167
BacDive-ID: 132378
DSM-Number: 100948
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, antibiotic compound production
description: Nonomuraea gerenzanensis DSM 100948 is an aerobe, Gram-positive bacterium that produces antibiotic compounds and was isolated from Indian soil.
NCBI tax id
- NCBI tax id: 93944
- Matching level: species
strain history
- @ref: 24167
- history: <- G. L. Marcone, University of Insubria, Italy <- ATCC; ATCC 39727
doi: 10.13145/bacdive132378.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Nonomuraea
- species: Nonomuraea gerenzanensis
- full scientific name: Nonomuraea gerenzanensis Dalmastri et al. 2016
@ref: 24167
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptosporangiaceae
genus: Nonomuraea
species: Nonomuraea gerenzanensis
full scientific name: Nonomuraea gerenzanensis Dalmastri et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 43806
- gram stain: positive
- motility: no
multimedia
- @ref: 24167
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100948.jpg
- caption: Medium 553 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24167 | GPHF-MEDIUM (DSMZ Medium 553) | yes | https://mediadive.dsmz.de/medium/553 | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
| 24167 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43806 | positive | growth | 22-40 | |
| 43806 | positive | optimum | 28-37 | mesophilic |
| 24167 | positive | growth | 28 | mesophilic |
culture pH
- @ref: 43806
- ability: positive
- type: growth
- pH: 6-10
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
- @ref: 43806
- oxygen tolerance: aerobe
compound production
- @ref: 24167
- compound: glycopeptide antibiotics
halophily
- @ref: 43806
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-3 %(w/v)
observation
- @ref: 43806
- observation: Production of a significant amount of the glycopeptide antibiotic A40926 is characteristic.
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43806 | 17268 | myo-inositol | - | carbon source |
| 43806 | 62968 | cellulose | - | degradation |
| 43806 | 28017 | starch | - | hydrolysis |
| 43806 | 17057 | cellobiose | + | carbon source |
| 43806 | 15824 | D-fructose | + | carbon source |
| 43806 | 12936 | D-galactose | + | carbon source |
| 43806 | 16899 | D-mannitol | + | carbon source |
| 43806 | 16024 | D-mannose | + | carbon source |
| 43806 | 17924 | D-sorbitol | + | carbon source |
| 43806 | 65327 | D-xylose | + | carbon source |
| 43806 | 30849 | L-arabinose | + | carbon source |
| 43806 | 62345 | L-rhamnose | + | carbon source |
| 43806 | 17716 | lactose | + | carbon source |
| 43806 | 17306 | maltose | + | carbon source |
| 43806 | 16634 | raffinose | + | carbon source |
| 43806 | 30031 | succinate | + | carbon source |
| 43806 | 17992 | sucrose | + | carbon source |
| 43806 | casein | + | degradation | |
| 43806 | 4767 | elastin | + | degradation |
| 43806 | 17895 | L-tyrosine | + | degradation |
| 43806 | 5291 | gelatin | + | hydrolysis |
| 43806 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 43806
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: yes
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 24167 | Indian soil | India | IND | Asia | |
| 43806 | A soil sample collected in India | India | IND | Asia | India |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_98143.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_2032;97_2449;98_3030;99_98143&stattab=map
- Last taxonomy: Nonomuraea
- 16S sequence: AJ582011
- Sequence Identity:
- Total samples: 740
- soil counts: 419
- aquatic counts: 63
- animal counts: 177
- plant counts: 81
Safety information
risk assessment
- @ref: 24167
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24167
- description: Nonomuraea sp. ATCC 39727 partial 16S rRNA gene, strain ATCC 39727
- accession: AJ582011
- length: 1459
- database: ena
- NCBI tax ID: 93944
Genome sequences
- @ref: 66792
- description: Nonomuraea gerenzanensis ATCC 39727
- accession: 651716751
- assembly level: draft
- database: img
- NCBI tax ID: 93944
GC content
- @ref: 24167
- GC-content: 71.2
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24167
culture collection no.: DSM 100948, ATCC 39727
straininfo link
- @ref: 90722
- straininfo: 41572
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26944798 | Classification of Nonomuraea sp. ATCC 39727, an actinomycete that produces the glycopeptide antibiotic A40926, as Nonomuraea gerenzanensis sp. nov. | Dalmastri C, Gastaldo L, Marcone GL, Binda E, Congiu T, Marinelli F | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000810 | 2016 | Actinomycetales/*classification/genetics/isolation & purification, Anti-Bacterial Agents/biosynthesis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, India, Muramic Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Teicoplanin/*analogs & derivatives/biosynthesis, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Transcriptome | 28442708 | The complete 12 Mb genome and transcriptome of Nonomuraea gerenzanensis with new insights into its duplicated "magic" RNA polymerase. | D'Argenio V, Petrillo M, Pasanisi D, Pagliarulo C, Colicchio R, Tala A, de Biase MS, Zanfardino M, Scolamiero E, Pagliuca C, Gaballo A, Cicatiello AG, Cantiello P, Postiglione I, Naso B, Boccia A, Durante M, Cozzuto L, Salvatore P, Paolella G, Salvatore F, Alifano P | Sci Rep | 10.1038/s41598-016-0025-0 | 2016 | Actinomycetales/*genetics/metabolism, Anti-Bacterial Agents/biosynthesis, Bacterial Proteins/*genetics, DNA-Directed RNA Polymerases/*genetics, *Genome, Bacterial, Hydrogen-Ion Concentration, Mutation, Teicoplanin/analogs & derivatives/biosynthesis, *Transcriptome | Genetics |
| Phylogeny | 29299772 | Nonomuraea lycopersici sp. nov., isolated from the root of tomato plants (Solanum lycopersicum L.). | Zheng W, Zhao J, Li D, Jiang H, Han L, Zhao X, Chen Y, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-017-1012-6 | 2018 | Actinomycetales/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Lycopersicon esculentum/*microbiology, Phospholipids/chemistry/metabolism, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics | Metabolism |
| Biotechnology | 32038594 | New Molecular Tools for Regulation and Improvement of A40926 Glycopeptide Antibiotic Production in Nonomuraea gerenzanensis ATCC 39727. | Yushchuk O, Andreo-Vidal A, Marcone GL, Bibb M, Marinelli F, Binda E | Front Microbiol | 10.3389/fmicb.2020.00008 | 2020 | ||
| Phylogeny | 32519020 | Nonomuraea terrae sp. nov., isolated from arid soil. | Ay H | Arch Microbiol | 10.1007/s00203-020-01941-9 | 2020 | Actinobacteria/classification/genetics, Actinomycetales/chemistry/*classification/genetics/isolation & purification, Base Composition, Fatty Acids/analysis, Genome, Bacterial/genetics, Phospholipids/analysis, Phylogeny, Soil/chemistry, *Soil Microbiology, Turkey | Genetics |
| Phylogeny | 34529164 | Comprehensive genome analysis of a novel actinobacterium with high potential for biotechnological applications, Nonomuraea aridisoli sp. nov., isolated from desert soil. | Saygin H, Ay H, Guven K, Cetin D, Sahin N | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01654-z | 2021 | *Actinobacteria/genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, Soil Microbiology, Vitamin K 2 | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24167 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100948 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100948) | |||
| 43806 | Claudia Dalmastri, Luciano Gastaldo, Giorgia Letizia Marcone, Elisa Binda, Terenzio Congiu, Flavia Marinelli | Classification of Nonomuraea sp. ATCC 39727, an actinomycete that produces the glycopeptide antibiotic A40926, as Nonomuraea gerenzanensis sp. nov. | 10.1099/ijsem.0.000810 | IJSEM 66: 912-921 2016 | 26944798 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 90722 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID41572.1 |