Name: Jatrophihabitans fulvus PB158
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132263

Type strain:

Species: Jatrophihabitans fulvus

Strain Designation: PB158

Culture col. no.: DSM 102133, JCM 30448, KCTC 33605

Strain history: <- Long Jin, KRIBB

NCBI tax ID(s): 1348469 (species)

SI-ID 404200

DSM 102133

Section

Jatrophihabitans fulvus PB158 is an aerobe, mesophilic bacterium that was isolated from Grass soil.

aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Jatrophihabitantales*
	Family	*Jatrophihabitantaceae*
	Genus	*Jatrophihabitans*
	Species	**Jatrophihabitans fulvus**
	Full Scientific Name (LPSN)	Jatrophihabitans fulvus Jin et al. 2015

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #24052]

Caption:

Medium 65 28°C

[Ref.: #24052]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24052]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #24052]

Culture medium growth

[Ref.: #24052]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24052]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24052]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #24052]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24052]	Sample type/isolated from	Grass soil
[Ref.: #24052]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #24052]	Country	Republic of Korea
[Ref.: #24052]	Country ISO 3 Code	KOR
[Ref.: #24052]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Grass soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From grass soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF056992 (>99% sequence identity) for Jatrophihabitans from Microbeatlas

Aquatic Samples	24
Soil Samples	723
Animal Samples	120
Plant Samples	37
Total Samples	904

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24052]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24052]	Jatrophihabitans fulvus strain PB158 16S ribosomal RNA gene, partial sequence	KF056992	1446	ENA	1348469 tax ID

[Ref.: #24052]

GC-content

72.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24052]

Culture collection no.

DSM 102133, JCM 30448, KCTC 33605

[Ref.: #90611]

SI-ID 404200

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jatrophihabitans huperziae sp. nov., an endophytic actinobacterium isolated from surface-sterilized tissue of the medicinal plant Huperzia serrata (Thunb.).	Gong ZL, Ai MJ, Sun HM, Liu HY, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001296	2016	*
Phylogeny	Jatrophihabitans fulvus sp. nov., an actinobacterium isolated from grass soil.	Jin L, Lee HG, Ko SR, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijsem.0.000443	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24052

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102133

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90611

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404200.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Jatrophihabitans fulvus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF