Archive BacDiveID:10.13145/bacdive132263.20230509.8.1

Strain identifier

BacDive ID: 132263

Type strain:

Species: Jatrophihabitans fulvus

Strain Designation: PB158

Strain history: <- Long Jin, KRIBB

NCBI tax ID(s): 1348469 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24052

BacDive-ID: 132263

DSM-Number: 102133

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Jatrophihabitans fulvus PB158 is an aerobe, mesophilic bacterium that was isolated from Grass soil.

NCBI tax id

NCBI tax id: 1348469
Matching level: species

strain history

@ref	history
24052	<- JCM; JCM 30448 <- L. Jin; KRIBB, South Korea; PB158
67770	L. Jin; KRIBB, South Korea; PB158.
67771	<- Long Jin, KRIBB

doi: 10.13145/bacdive132263.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Jatrophihabitantales
family: Jatrophihabitantaceae
genus: Jatrophihabitans
species: Jatrophihabitans fulvus
full scientific name: Jatrophihabitans fulvus Jin et al. 2015

@ref: 24052

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Jatrophihabitantaceae

genus: Jatrophihabitans

species: Jatrophihabitans fulvus

full scientific name: Jatrophihabitans fulvus Jin et al. 2015 emend. Lee et al. 2018

strain designation: PB158

type strain: yes

Morphology

multimedia

@ref: 24052
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102133.jpg
caption: Medium 65 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref: 24052
name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
growth: yes
link: https://mediadive.dsmz.de/medium/65
composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
24052	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic
67771	positive	growth	30	mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 67771
oxygen tolerance: aerobe

observation

@ref: 67770
observation: quinones: MK-9(H₄)

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent
24052	Grass soil	Daejeon	Republic of Korea	KOR	Asia
67770	Grass soil	Daejeon	Republic of Korea	KOR	Asia
67771	From grass soil		Republic of Korea	KOR	Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

taxonmaps

@ref: 69479
File name: preview.99_85623.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_94;96_2795;97_3537;98_4478;99_85623&stattab=map
Last taxonomy: Jatrophihabitans
16S sequence: KF056992
Sequence Identity:
Total samples: 904
soil counts: 723
aquatic counts: 24
animal counts: 120
plant counts: 37

Safety information

risk assessment

@ref: 24052
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 24052
description: Jatrophihabitans fulvus strain PB158 16S ribosomal RNA gene, partial sequence
accession: KF056992
length: 1446
database: ena
NCBI tax ID: 1348469

GC content

@ref: 24052
GC-content: 72.4
method: high performance liquid chromatography (HPLC)

External links

@ref: 24052

culture collection no.: DSM 102133, JCM 30448, KCTC 33605

straininfo link

@ref: 90611
straininfo: 404200

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	26296765	Jatrophihabitans fulvus sp. nov., an actinobacterium isolated from grass soil.	Jin L, Lee HG, Ko SR, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijsem.0.000443	2015	Actinobacteria/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Poaceae/microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry	Genetics
Phylogeny	27413046	Jatrophihabitans huperziae sp. nov., an endophytic actinobacterium isolated from surface-sterilized tissue of the medicinal plant Huperzia serrata (Thunb.).	Gong ZL, Ai MJ, Sun HM, Liu HY, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001296	2016	Actinobacteria/classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Huperzia/microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24052	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102133	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102133)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
67771	Curators of the KCTC		https://kctc.kribb.re.kr/En/Kctc
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
90611	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID404200.1