Strain identifier

BacDive ID: 132263

Type strain: Yes

Species: Jatrophihabitans fulvus

Strain Designation: PB158

Strain history: <- Long Jin, KRIBB

NCBI tax ID(s): 1348469 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24052

BacDive-ID: 132263

DSM-Number: 102133

keywords: aerobe, Bacteria, 16S sequence, mesophilic

description: Jatrophihabitans fulvus PB158 is an aerobe, mesophilic bacterium that was isolated from Grass soil.

NCBI tax id

  • NCBI tax id: 1348469
  • Matching level: species

strain history

doi: 10.13145/bacdive132263.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Jatrophihabitantales
  • family: Jatrophihabitantaceae
  • genus: Jatrophihabitans
  • species: Jatrophihabitans fulvus
  • full scientific name: Jatrophihabitans fulvus Jin et al. 2015

@ref: 24052

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Jatrophihabitantaceae

genus: Jatrophihabitans

species: Jatrophihabitans fulvus

full scientific name: Jatrophihabitans fulvus Jin et al. 2015 emend. Lee et al. 2018

strain designation: PB158

type strain: yes

Morphology

multimedia

  • @ref: 24052
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102133.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 24052
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 12.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24052positivegrowth28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24052Grass soilDaejeonRepublic of KoreaKORAsia
67770Grass soilDaejeonRepublic of KoreaKORAsia
67771From grass soilRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 24052
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24052
  • description: Jatrophihabitans fulvus strain PB158 16S ribosomal RNA gene, partial sequence
  • accession: KF056992
  • length: 1446
  • database: ena
  • NCBI tax ID: 1348469

GC content

  • @ref: 24052
  • GC-content: 72.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24052

culture collection no.: DSM 102133, JCM 30448, KCTC 33605

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26296765Jatrophihabitans fulvus sp. nov., an actinobacterium isolated from grass soil.Jin L, Lee HG, Ko SR, Ahn CY, Oh HMInt J Syst Evol Microbiol10.1099/ijsem.0.0004432015Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny27413046Jatrophihabitans huperziae sp. nov., an endophytic actinobacterium isolated from surface-sterilized tissue of the medicinal plant Huperzia serrata (Thunb.).Gong ZL, Ai MJ, Sun HM, Liu HY, Yu LY, Zhang YQInt J Syst Evol Microbiol10.1099/ijsem.0.0012962016Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Glycolipids/chemistry, Huperzia/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24052Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102133Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102133)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc