Name: Micromonospora palomenae NEAU-CX1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132254

Type strain:

Species: Micromonospora palomenae

Strain Designation: NEAU-CX1

Culture col. no.: DSM 102131, CGMCC 4.7175, JCM 30056

Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-CX1.

NCBI tax ID(s): 1461247 (species)

SI-ID 404800

DSM 102131

Section

Micromonospora palomenae NEAU-CX1 is a mesophilic bacterium that was isolated from Nymphs of stinkbug .

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora palomenae**
	Full Scientific Name (LPSN)	Micromonospora palomenae Fang et al. 2015

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 83 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24043]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #24043]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

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Observation

quinones: MK-9(H₈), MK-10(H₂), MK-10(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24043]	Sample type/isolated from	Nymphs of stinkbug (Palomena viridissima Poda)
[Ref.: #24043]	Host species	Palomena viridissima
[Ref.: #24043]	Geographic location (country and/or sea, region)	Northeast Agric. Univ., Harbin
[Ref.: #24043]	Country	China
[Ref.: #24043]	Country ISO 3 Code	CHN
[Ref.: #24043]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Nymphs of stinkbug (Palomena viridissima Poda) in Northeast Agric. Univ.
[Ref.: #67770]	Host species	Palomena viridissima
[Ref.: #67770]	Geographic location (country and/or sea, region)	Harbin
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Arthropoda

#Insecta

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24043]	Micromonospora palomenae strain NEAU-CX1 16S ribosomal RNA gene, partial sequence	KF887911	1509	ENA	1461247 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Micromonospora palomenae DSM 102131	GCA_007829925	contig	GenBank	1461247 tax ID	*
[Ref.: #66792]	Micromonospora palomenae strain DSM 102131	1461247.3	wgs	PATRIC	1461247 tax ID	*
[Ref.: #66792]	Micromonospora palomenae DSM 102131	2818991478	draft	JGI IMG/M	1461247 tax ID	*

[Ref.: #24043]	GC-content	70.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	70.5-71.1 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Micromonospora palomenae strain DSM 102131 PATRIC: 1461247.3
[Ref.: #69480]	motile	no	94.625	no
[Ref.: #69480]	gram-positive	yes	92.343	no
[Ref.: #69480]	anaerobic	no	99.304	no
[Ref.: #69480]	halophile	no	94.849	no
[Ref.: #69480]	spore-forming	yes	94.377	no
[Ref.: #69480]	thermophile	no	98.586	yes
[Ref.: #69480]	glucose-util	yes	87.077	no
[Ref.: #69480]	aerobic	yes	96.284	no
[Ref.: #69480]	flagellated	no	97.915	no
[Ref.: #69480]	glucose-ferment	no	93.714	no

Availability in culture collections External links

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Culture collection no.

DSM 102131, CGMCC 4.7175, JCM 30056

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SI-ID 404800

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora fulva sp. nov., isolated from forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001858	2017	*
Phylogeny	Micromonospora sediminis sp. nov., isolated from mangrove sediment.	Phongsopitanun W, Kudo T, Ohkuma M, Pittayakhajonwut P, Suwanborirux K, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001175	2016	*
Phylogeny	Two new species of the genus Micromonospora: Micromonospora palomenae sp. nov. and Micromonospora harpali sp. nov. isolated from the insects.	Fang B, Liu C, Guan X, Song J, Zhao J, Liu H, Li C, Ning W, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0472-9	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24043

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102131

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90603

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404800.1 )

* These data were automatically processed and therefore are not curated

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Micromonospora palomenae strain DSM 102131

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