Strain identifier

BacDive ID: 132254

Type strain: Yes

Species: Micromonospora palomenae

Strain Designation: NEAU-CX1

Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-CX1.

NCBI tax ID(s): 1461247 (species)

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General

@ref: 24043

BacDive-ID: 132254

DSM-Number: 102131

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Micromonospora palomenae NEAU-CX1 is a mesophilic bacterium that was isolated from Nymphs of stinkbug .

NCBI tax id

  • NCBI tax id: 1461247
  • Matching level: species

strain history

@refhistory
24043<- JCM; JCM 30056 <- C. Liu; NEAU-CX1
67770C. Liu; Northeast Agric. Univ., China; NEAU-CX1.

doi: 10.13145/bacdive132254.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora palomenae
  • full scientific name: Micromonospora palomenae Fang et al. 2015

@ref: 24043

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora palomenae

full scientific name: Micromonospora palomenae Fang et al. 2015

strain designation: NEAU-CX1

type strain: yes

Morphology

multimedia

  • @ref: 24043
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102131.jpg
  • caption: Medium 83 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 24043
  • name: CZAPEK PEPTONE AGAR (DSMZ Medium 83)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/83
  • composition: Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24043positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8), MK-10(H2), MK-10(H6)

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
24043Nymphs of stinkbug (Palomena viridissima Poda)Palomena viridissimaNortheast Agric. Univ., HarbinChinaCHNAsia
67770Nymphs of stinkbug (Palomena viridissima Poda) in Northeast Agric. Univ.Palomena viridissimaHarbinChinaCHNAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Arthropoda
  • Cat3: #Insecta

Safety information

risk assessment

  • @ref: 24043
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24043
  • description: Micromonospora palomenae strain NEAU-CX1 16S ribosomal RNA gene, partial sequence
  • accession: KF887911
  • length: 1509
  • database: ena
  • NCBI tax ID: 1461247

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Micromonospora palomenae DSM 102131GCA_007829925contigncbi1461247
66792Micromonospora palomenae strain DSM 1021311461247.3wgspatric1461247
66792Micromonospora palomenae DSM 1021312818991478draftimg1461247

GC content

@refGC-contentmethod
2404370.8thermal denaturation, midpoint method (Tm)
6777070.5-71.1thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.625no
gram-positiveyes92.343no
anaerobicno99.304no
halophileno94.849no
spore-formingyes94.377no
thermophileno98.586yes
glucose-utilyes87.077no
aerobicyes96.284no
flagellatedno97.915no
glucose-fermentno93.714no

External links

@ref: 24043

culture collection no.: DSM 102131, CGMCC 4.7175, JCM 30056

straininfo link

  • @ref: 90603
  • straininfo: 404800

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25957972Two new species of the genus Micromonospora: Micromonospora palomenae sp. nov. and Micromonospora harpali sp. nov. isolated from the insects.Fang B, Liu C, Guan X, Song J, Zhao J, Liu H, Li C, Ning W, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-015-0472-92015Animals, Bacterial Typing Techniques, China, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Insecta/*microbiology, Micromonospora/*classification/genetics/*isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny27220280Micromonospora sediminis sp. nov., isolated from mangrove sediment.Phongsopitanun W, Kudo T, Ohkuma M, Pittayakhajonwut P, Suwanborirux K, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0011752016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Micromonospora/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Vitamin K 2/chemistry, *WetlandsTranscriptome
Phylogeny28629505Micromonospora fulva sp. nov., isolated from forest soil.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0018582017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Forests, Micromonospora/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24043Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102131Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102131)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
90603Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404800.1