Name: Nocardia mediterranei Lepetit S 955
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13221

Type strain:

Species: Nocardia mediterranei

Strain Designation: Lepetit S 955, S 955

Culture col. no.: DSM 46096, ATCC 21411, IMET 7669

Strain history: <- IMET <- M.P. Lechevalier <- ATCC <- Lepetit Labs., S 955 (Streptomyces mediterranei)

NCBI tax ID(s): 33910 (species)

SI-ID 125796

ATCC 21411, DSM 46096, IMET 7669, KCTC 9404

Section

Nocardia mediterranei Lepetit S 955 is a spore-forming, mesophilic bacterium that produces antibiotic compounds.

antibiotic compound production
spore-forming
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	Nocardia mediterranei
	Full Scientific Name (LPSN)	Nocardia mediterranei corrig. (Margalith and Beretta 1960) Thiemann et al. 1969 (Approved Lists 1980)

	Synonym	Nocardia mediterranea
	Synonym	**Amycolatopsis mediterranei**
	Synonym	"Streptomyces* mediterranei"*

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.665

Multimedia content

[Ref.: #12435]

Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12435]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #12435]	Name of produced compound	27-demethoxy-27-hydroxy rifamycin derivates
[Ref.: #20216]	Name of produced compound	27-demethoxy-27-hydroxy-rifamycin

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Amycolatopsis mediterranei DSM 46096	GCA_000700945	contig	GenBank	33910 tax ID	*
[Ref.: #66792]	Amycolatopsis mediterranei strain DSM 46096	33910.5	wgs	PATRIC	33910 tax ID	*
[Ref.: #66792]	Amycolatopsis mediterranei DSM 46096 (contamination screened)	2609460149	draft	JGI IMG/M	33910 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Amycolatopsis mediterranei strain DSM 46096 PATRIC: 33910.5
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Amycolatopsis mediterranei strain DSM 46096 PATRIC: 33910.5
[Ref.: #69480]	gram-positive	yes	87.201	no
[Ref.: #69480]	anaerobic	no	99.389	no
[Ref.: #69480]	halophile	no	90.863	no
[Ref.: #69480]	spore-forming	yes	88.871	no
[Ref.: #69480]	glucose-util	yes	90.685	no
[Ref.: #69480]	motile	no	91.007	no
[Ref.: #69480]	flagellated	no	97.62	no
[Ref.: #69480]	aerobic	yes	90.947	no
[Ref.: #69480]	thermophile	no	98.626	no
[Ref.: #69480]	glucose-ferment	no	91.502	no

Availability in culture collections External links

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Culture collection no.

DSM 46096, ATCC 21411, IMET 7669

[Ref.: #82428]

SI-ID 125796

References

#12435

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46096

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#82428

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125796.1 )

* These data were automatically processed and therefore are not curated

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Amycolatopsis mediterranei strain DSM 46096

Amycolatopsis mediterranei strain DSM 46096

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