Name: Comamonas guangdongensis DSM 103041
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132144

Type strain:

Species: Comamonas guangdongensis

Culture col. no.: DSM 103041, CCTCC AB 2011133, KACC 16241, CY 01

Strain history: <- CCTCC <- G. Zhang, Guangdong Institute of Eco-Environmental and Soil Science, Guangzhou, China; CY01

NCBI tax ID(s): 510515 (species)

SI-ID 396970

DSM 103041

Section

Comamonas guangdongensis DSM 103041 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from subterranean forest sediment.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Comamonas*
	Species	**Comamonas guangdongensis**
	Full Scientific Name (LPSN)	Comamonas guangdongensis Zhang et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30617]	Gram stain	negative

[Ref.: #30617]	Cell length	1.35 µm

[Ref.: #30617]	Cell width	0.35 µm

[Ref.: #30617]	Cell shape	rod-shaped

[Ref.: #30617]	Motility	yes

[Ref.: #30617]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23934]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #23934]

Culture medium growth

[Ref.: #23934]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23934]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #23934]	growth	28 °C
[Ref.: #30617]	growth	10-45 °C
[Ref.: #30617]	optimum	31 °C

[Ref.: #23934]	Temperature range	mesophilic
[Ref.: #30617]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30617]			optimum	6.75
[Ref.: #30617]			growth	5.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30617]

Oxygen tolerance

facultative anaerobe

[Ref.: #30617]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30617]		NaCl		growth	0-3	%
[Ref.: #30617]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30617]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30617]	acetate ChEBI	+	carbon source
[Ref.: #30617]	alanine ChEBI	+	carbon source
[Ref.: #30617]	citrate ChEBI	+	carbon source
[Ref.: #30617]	formate ChEBI	+	carbon source
[Ref.: #30617]	galactonate ChEBI	+	carbon source
[Ref.: #30617]	gluconate ChEBI	+	carbon source
[Ref.: #30617]	glycogen ChEBI	+	carbon source
[Ref.: #30617]	lactate ChEBI	+	carbon source
[Ref.: #30617]	leucine ChEBI	+	carbon source
[Ref.: #30617]	malate ChEBI	+	carbon source
[Ref.: #30617]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #30617]	phenylacetate ChEBI	+	carbon source
[Ref.: #30617]	phenylalanine ChEBI	+	carbon source
[Ref.: #30617]	proline ChEBI	+	carbon source
[Ref.: #30617]	propionate ChEBI	+	carbon source
[Ref.: #30617]	succinate ChEBI	+	carbon source
[Ref.: #30617]	threonine ChEBI	+	carbon source
[Ref.: #30617]	tween 40 ChEBI	+	carbon source
[Ref.: #30617]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23934]	Sample type/isolated from	subterranean forest sediment
[Ref.: #23934]	Geographic location (country and/or sea, region)	Sihui City, Guangdong province
[Ref.: #23934]	Country	China
[Ref.: #23934]	Country ISO 3 Code	CHN
[Ref.: #23934]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23934]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23934]	Comamonas guangdongensis strain CY 01 16S ribosomal RNA gene, partial sequence	EU515237	1402	ENA	510515 tax ID

[Ref.: #30617]

GC-content

64.8 mol%

Availability in culture collections External links

[Ref.: #23934]

Culture collection no.

DSM 103041, CCTCC AB 2011133, KACC 16241, CY 01

[Ref.: #90500]

SI-ID 396970

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Comamonas sediminis sp. nov., isolated from lagoon sediments.	Subhash Y, Bang JJ, You TH, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001115	2016	*
Phylogeny	Description of Comamonas serinivorans sp. nov., isolated from wheat straw compost.	Zhu D, Xie C, Huang Y, Sun J, Zhang W	Int J Syst Evol Microbiol	10.1099/ijs.0.066688-0	2014	*
Phylogeny	Comamonas guangdongensis sp. nov., isolated from subterranean forest sediment, and emended description of the genus Comamonas.	Zhang J, Wang Y, Zhou S, Wu C, He J, Li F	Int J Syst Evol Microbiol	10.1099/ijs.0.040188-0	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23934

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103041

#30617

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26948 (see below)

#90500

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396970.1 )

#26948

IJSEM 809 2013 ( DOI 10.1099/ijs.0.040188-0 , PubMed 22581903 )

* These data were automatically processed and therefore are not curated

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