Strain identifier

BacDive ID: 132144

Type strain: Yes

Species: Comamonas guangdongensis

Strain history: <- CCTCC <- G. Zhang, Guangdong Institute of Eco-Environmental and Soil Science, Guangzhou, China; CY01

NCBI tax ID(s): 510515 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 23934

BacDive-ID: 132144

DSM-Number: 103041

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Comamonas guangdongensis DSM 103041 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from subterranean forest sediment.

NCBI tax id

  • NCBI tax id: 510515
  • Matching level: species

strain history

  • @ref: 23934
  • history: <- CCTCC <- G. Zhang, Guangdong Institute of Eco-Environmental and Soil Science, Guangzhou, China; CY01

doi: 10.13145/bacdive132144.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas guangdongensis
  • full scientific name: Comamonas guangdongensis Zhang et al. 2013

@ref: 23934

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas guangdongensis

full scientific name: Comamonas guangdongensis Zhang et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 30617
  • gram stain: negative
  • cell length: 1.35 µm
  • cell width: 0.35 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 30617
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 23934
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
23934positivegrowth28mesophilic
30617positivegrowth10-45
30617positiveoptimum31mesophilic

culture pH

@refabilitytypepHPH range
30617positivegrowth5.5-8.5alkaliphile
30617positiveoptimum6.75

Physiology and metabolism

oxygen tolerance

  • @ref: 30617
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 30617
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30617NaClpositivegrowth0-3 %
30617NaClpositiveoptimum0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3061730089acetate+carbon source
3061716449alanine+carbon source
30617286442-oxopentanoate+carbon source
3061716947citrate+carbon source
3061715740formate+carbon source
3061724148galactonate+carbon source
3061724265gluconate+carbon source
3061728087glycogen+carbon source
3061724996lactate+carbon source
3061725017leucine+carbon source
3061725115malate+carbon source
3061718401phenylacetate+carbon source
3061728044phenylalanine+carbon source
3061726271proline+carbon source
3061717272propionate+carbon source
3061751850methyl pyruvate+carbon source
3061730031succinate+carbon source
3061726986threonine+carbon source
3061753423tween 40+carbon source
3061753426tween 80+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 23934
  • sample type: subterranean forest sediment
  • geographic location: Sihui City, Guangdong province
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Sediment

Safety information

risk assessment

  • @ref: 23934
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23934
  • description: Comamonas guangdongensis strain CY 01 16S ribosomal RNA gene, partial sequence
  • accession: EU515237
  • length: 1402
  • database: ena
  • NCBI tax ID: 510515

GC content

  • @ref: 30617
  • GC-content: 64.8

External links

@ref: 23934

culture collection no.: DSM 103041, CCTCC AB 2011133, KACC 16241, CY 01

straininfo link

  • @ref: 90500
  • straininfo: 396970

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22581903Comamonas guangdongensis sp. nov., isolated from subterranean forest sediment, and emended description of the genus Comamonas.Zhang J, Wang Y, Zhou S, Wu C, He J, Li FInt J Syst Evol Microbiol10.1099/ijs.0.040188-02012Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Trees/microbiology, Ubiquinone/analysisGenetics
Phylogeny25242539Description of Comamonas serinivorans sp. nov., isolated from wheat straw compost.Zhu D, Xie C, Huang Y, Sun J, Zhang WInt J Syst Evol Microbiol10.1099/ijs.0.066688-02014Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Triticum/*microbiology, Ubiquinone/chemistryGenetics
Phylogeny27117992Description of Comamonas sediminis sp. nov., isolated from lagoon sediments.Subhash Y, Bang JJ, You TH, Lee SSInt J Syst Evol Microbiol10.1099/ijsem.0.0011152016Bacterial Typing Techniques, Base Composition, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, North Carolina, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23934Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103041Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103041)
30617Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172694828776041
90500Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396970.1