Strain identifier
BacDive ID: 132144
Type strain:
Species: Comamonas guangdongensis
Strain history: <- CCTCC <- G. Zhang, Guangdong Institute of Eco-Environmental and Soil Science, Guangzhou, China; CY01
NCBI tax ID(s): 510515 (species)
General
@ref: 23934
BacDive-ID: 132144
DSM-Number: 103041
keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Comamonas guangdongensis DSM 103041 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from subterranean forest sediment.
NCBI tax id
- NCBI tax id: 510515
- Matching level: species
strain history
- @ref: 23934
- history: <- CCTCC <- G. Zhang, Guangdong Institute of Eco-Environmental and Soil Science, Guangzhou, China; CY01
doi: 10.13145/bacdive132144.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Comamonas
- species: Comamonas guangdongensis
- full scientific name: Comamonas guangdongensis Zhang et al. 2013
@ref: 23934
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Comamonas
species: Comamonas guangdongensis
full scientific name: Comamonas guangdongensis Zhang et al. 2013
type strain: yes
Morphology
cell morphology
- @ref: 30617
- gram stain: negative
- cell length: 1.35 µm
- cell width: 0.35 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30617
- production: yes
Culture and growth conditions
culture medium
- @ref: 23934
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
23934 | positive | growth | 28 | mesophilic |
30617 | positive | growth | 10-45 | |
30617 | positive | optimum | 31 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30617 | positive | growth | 5.5-8.5 | alkaliphile |
30617 | positive | optimum | 6.75 |
Physiology and metabolism
oxygen tolerance
- @ref: 30617
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 30617
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30617 | NaCl | positive | growth | 0-3 % |
30617 | NaCl | positive | optimum | 0.5 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30617 | 30089 | acetate | + | carbon source |
30617 | 16449 | alanine | + | carbon source |
30617 | 28644 | 2-oxopentanoate | + | carbon source |
30617 | 16947 | citrate | + | carbon source |
30617 | 15740 | formate | + | carbon source |
30617 | 24148 | galactonate | + | carbon source |
30617 | 24265 | gluconate | + | carbon source |
30617 | 28087 | glycogen | + | carbon source |
30617 | 24996 | lactate | + | carbon source |
30617 | 25017 | leucine | + | carbon source |
30617 | 25115 | malate | + | carbon source |
30617 | 18401 | phenylacetate | + | carbon source |
30617 | 28044 | phenylalanine | + | carbon source |
30617 | 26271 | proline | + | carbon source |
30617 | 17272 | propionate | + | carbon source |
30617 | 51850 | methyl pyruvate | + | carbon source |
30617 | 30031 | succinate | + | carbon source |
30617 | 26986 | threonine | + | carbon source |
30617 | 53423 | tween 40 | + | carbon source |
30617 | 53426 | tween 80 | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 23934
- sample type: subterranean forest sediment
- geographic location: Sihui City, Guangdong province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Forest |
#Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 23934
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23934
- description: Comamonas guangdongensis strain CY 01 16S ribosomal RNA gene, partial sequence
- accession: EU515237
- length: 1402
- database: ena
- NCBI tax ID: 510515
GC content
- @ref: 30617
- GC-content: 64.8
External links
@ref: 23934
culture collection no.: DSM 103041, CCTCC AB 2011133, KACC 16241, CY 01
straininfo link
- @ref: 90500
- straininfo: 396970
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22581903 | Comamonas guangdongensis sp. nov., isolated from subterranean forest sediment, and emended description of the genus Comamonas. | Zhang J, Wang Y, Zhou S, Wu C, He J, Li F | Int J Syst Evol Microbiol | 10.1099/ijs.0.040188-0 | 2012 | Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Trees/microbiology, Ubiquinone/analysis | Genetics |
Phylogeny | 25242539 | Description of Comamonas serinivorans sp. nov., isolated from wheat straw compost. | Zhu D, Xie C, Huang Y, Sun J, Zhang W | Int J Syst Evol Microbiol | 10.1099/ijs.0.066688-0 | 2014 | Bacterial Typing Techniques, Base Composition, China, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Triticum/*microbiology, Ubiquinone/chemistry | Genetics |
Phylogeny | 27117992 | Description of Comamonas sediminis sp. nov., isolated from lagoon sediments. | Subhash Y, Bang JJ, You TH, Lee SS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001115 | 2016 | Bacterial Typing Techniques, Base Composition, Comamonas/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, North Carolina, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
23934 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103041 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103041) | |||
30617 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26948 | 28776041 | |
90500 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396970.1 |