Name: Leucobacter salsicius M1-8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132119

Type strain:

Species: Leucobacter salsicius

Strain Designation: M1-8

Culture col. no.: DSM 103340, JCM 16362, KACC 21127

Strain history: J.-W. Bae M1-8.

NCBI tax ID(s): 1238186 (strain), 664638 (species)

SI-ID 406458

DSM 103340

Special Collections

Section

Leucobacter salsicius M1-8 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from jeotgal, a Korean salt-fermented food.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Leucobacter*
	Species	**Leucobacter salsicius**
	Full Scientific Name (LPSN)	Leucobacter salsicius Yun et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29800]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.813

[Ref.: #29800]	Cell length	1.25 µm

[Ref.: #29800]	Cell shape	rod-shaped

[Ref.: #29800]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23909]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #23909]

Culture medium growth

[Ref.: #23909]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23909]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #23909]	growth	28 °C
[Ref.: #29800]	growth	25-30 °C
[Ref.: #29800]	optimum	27.5 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29800]			optimum	7.5
[Ref.: #29800]			growth	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29800]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29800]		NaCl		growth	0-4	%
[Ref.: #29800]		NaCl		optimum	2	%

[Ref.: #67770]

Observation

quinones: MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29800]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #29800]	esculin ChEBI	+	hydrolysis
[Ref.: #29800]	glucose ChEBI	+	carbon source
[Ref.: #29800]	lactose ChEBI	+	carbon source
[Ref.: #29800]	salicin ChEBI	+	carbon source
[Ref.: #29800]	sorbitol ChEBI	+	carbon source
[Ref.: #29800]	sucrose ChEBI	+	carbon source
[Ref.: #29800]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29800]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23909]	Sample type/isolated from	jeotgal, a Korean salt-fermented food
[Ref.: #23909]	Country	Republic of Korea
[Ref.: #23909]	Country ISO 3 Code	KOR
[Ref.: #23909]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Jeotgal (a Korean salt-fermented food containing tiny shrimps)
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ352403 (>99% sequence identity) for Leucobacter salsicius from Microbeatlas

Aquatic Samples	452
Soil Samples	306
Animal Samples	1442
Plant Samples	40
Total Samples	2240

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23909]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23909]	Leucobacter salsicius M1-8 16S ribosomal RNA gene, partial sequence	GQ352403	1448	GenBank ENA	1238186 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Leucobacter salsicius M1-8	GCA_000350525	contig	GenBank ENA	1238186 tax ID
[Ref.: #66792]	Leucobacter salsicius M1-8	1238186.3	wgs	PATRIC	1238186 tax ID	*
[Ref.: #66792]	Leucobacter salsicius M1-8	2526164546	draft	JGI IMG/M	1238186 tax ID	*

[Ref.: #23909]	GC-content	62.8 mol%
[Ref.: #67770]	GC-content	64.5 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	62.8 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leucobacter salsicius M1-8 PATRIC: 1238186.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.813	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.789	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.143	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.917	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.825	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	94.5	yes

Availability in culture collections External links

[Ref.: #23909]

Culture collection no.

DSM 103340, JCM 16362, KACC 21127

[Ref.: #90475]

SI-ID 406458

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leucobacter margaritiformis sp. nov., isolated from bamboo extract.	Lee JH, Lee SS	Curr Microbiol	10.1007/s00284-012-0089-4	2012	*
Phylogeny	Leucobacter salsicius sp. nov., from a salt-fermented food.	Yun JH, Roh SW, Kim MS, Jung MJ, Park EJ, Shin KS, Nam YD, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.021360-0	2010	*
Genetics	Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8(T.).	Yun JH, Cho YJ, Chun J, Hyun DW, Bae JW	Stand Genomic Sci	10.4056/sigs.4708537	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23909

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103340

#29800

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26177 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90475

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406458.1 )

#26177

IJSEM 502 2011 ( DOI 10.1099/ijs.0.021360-0 , PubMed 20363927 )

* These data were automatically processed and therefore are not curated

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