Name: Hominimerdicola aceti Sanger_31
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132102

Type strain:

Species: Hominimerdicola aceti

Strain Designation: Sanger_31

Culture col. no.: DSM 102216, JCM 34818

Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_31

NCBI tax ID(s): 41978 (species)

SI-ID 399260

DSM 102216

Section

Hominimerdicola aceti Sanger_31 is a mesophilic bacterium that was isolated from faeces from healthy human.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Hominimerdicola*
	Species	**Hominimerdicola aceti**
	Full Scientific Name (LPSN)	Hominimerdicola aceti Hitch et al. 2022

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23892]

Culture medium

RUMINOCOCCUS ALBUS MEDIUM (DSMZ Medium 436)

[Ref.: #23892]

Culture medium growth

[Ref.: #23892]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23892]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23892]			growth	37 °C

[Ref.: #23892]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23892]	Sample type/isolated from	faeces from healthy human
[Ref.: #23892]	Geographic location (country and/or sea, region)	Cambridgeshire
[Ref.: #23892]	Country	United Kingdom
[Ref.: #23892]	Country ISO 3 Code	GBR
[Ref.: #23892]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hominimerdicola aceti Sanger_31	GCA_025567495	scaffold	GenBank	2981726 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hominimerdicola aceti Sanger_31 NCBI: GCA_025567495.1
[Ref.: #69480]	motile	no	85.661	no
[Ref.: #69480]	flagellated	no	93.617	no
[Ref.: #69480]	gram-positive	yes	85.558	no
[Ref.: #69480]	anaerobic	yes	99.729	no
[Ref.: #69480]	aerobic	no	99.163	no
[Ref.: #69480]	halophile	no	87.126	no
[Ref.: #69480]	spore-forming	no	76.557	no
[Ref.: #69480]	glucose-ferment	yes	75.255	no
[Ref.: #69480]	thermophile	no	90.926	yes
[Ref.: #69480]	glucose-util	yes	81.557	no

Availability in culture collections External links

[Ref.: #23892]

Culture collection no.

DSM 102216, JCM 34818

[Ref.: #90458]

SI-ID 399260

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23892

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102216

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90458

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399260.1 )

* These data were automatically processed and therefore are not curated

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