Archive BacDiveID:10.13145/bacdive132102.20230509.8.1

Strain identifier

BacDive ID: 132102

Type strain:

Species: Hominimerdicola aceti

Strain Designation: Sanger_31

Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_31

NCBI tax ID(s): 41978 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23892

BacDive-ID: 132102

DSM-Number: 102216

keywords: genome sequence, Bacteria, mesophilic

description: Hominimerdicola aceti Sanger_31 is a mesophilic bacterium that was isolated from faeces from healthy human.

NCBI tax id

NCBI tax id: 41978
Matching level: species

strain history

@ref: 23892
history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_31

doi: 10.13145/bacdive132102.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Oscillospiraceae
genus: Hominimerdicola
species: Hominimerdicola aceti
full scientific name: Hominimerdicola aceti Hitch et al. 2022

@ref: 23892

domain: Bacteria

phylum: Bacillota

class: Clostridia

order: Eubacteriales

family: Oscillospiraceae

genus: Hominimerdicola

species: Hominimerdicola aceti

full scientific name: Hominimerdicola aceti Hitch et al. 2022

strain designation: Sanger_31

type strain: yes

Culture and growth conditions

culture medium

@ref: 23892
name: RUMINOCOCCUS ALBUS MEDIUM (DSMZ Medium 436)
growth: yes
link: https://mediadive.dsmz.de/medium/436
composition: Name: RUMINOCOCCUS ALBUS MEDIUM (DSMZ Medium 436) Composition: Tryptone 5.0 g/l Na2CO3 4.0 g/l Glucose 3.0 g/l Yeast extract 2.0 g/l Cellobiose 2.0 g/l (NH4)2SO4 0.8 g/l L-Cysteine HCl x H2O 0.5 g/l NaCl 0.48 g/l K2HPO4 0.24 g/l KH2PO4 0.24 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 7 H2O 0.064 g/l Resazurin 0.001 g/l Isovaleric acid 2-Methylbutyric acid Isobutyric acid Distilled water

culture temp

@ref: 23892
growth: positive
type: growth
temperature: 37
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23892
sample type: faeces from healthy human
geographic location: Cambridgeshire
country: United Kingdom
origin.country: GBR
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host	#Human
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Sequence information

Genome sequences

@ref: 66792
description: Hominimerdicola aceti Sanger_31
accession: GCA_025567495
assembly level: scaffold
database: ncbi
NCBI tax ID: 2981726

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	85.661	no
flagellated	no	93.617	no
gram-positive	yes	85.558	no
anaerobic	yes	99.729	no
aerobic	no	99.163	no
halophile	no	87.126	no
spore-forming	no	76.557	no
glucose-ferment	yes	75.255	no
thermophile	no	90.926	yes
glucose-util	yes	81.557	no

External links

@ref: 23892

culture collection no.: DSM 102216, JCM 34818

straininfo link

@ref: 90458
straininfo: 399260

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23892	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102216	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102216)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90458	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID399260.1