Name: Bacillus timonensis 10403023
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1320

Type strain:

Species: Bacillus timonensis

Strain Designation: 10403023, MM10403188

Culture col. no.: DSM 25372, CSUR P162

Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; MM10403188 <- M. Million, URMITE, 27 bd Jean Moulin, 13385 Marseille Cedex 05, France

NCBI tax ID(s): 1033734 (species)

Special Collections

Section

Bacillus timonensis 10403023 is a spore-forming, motile bacterium that was isolated from human feces.

motile
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	"Bacillus timonensis"
	Full Scientific Name (LPSN)	Bacillus timonensis Kokcha et al. 2012

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18011]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #18011]

Culture medium growth

[Ref.: #18011]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18011]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18011]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

yes Confidence in %92.337

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18011]	Sample type/isolated from	human feces
[Ref.: #18011]	Country	Senegal
[Ref.: #18011]	Country ISO 3 Code	SEN
[Ref.: #18011]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF824810 (>99% sequence identity) for Bacillus timonensis from Microbeatlas

Aquatic Samples	17
Soil Samples	121
Animal Samples	24
Plant Samples	13
Total Samples	175

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18011]	Bacillus timonensis strain 10403023 16S ribosomal RNA gene, partial sequence	JF824810	1472	GenBank ENA	1033734 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus timonensis MM10403188	GCA_000285535	scaffold	GenBank ENA	1033734 tax ID	*
[Ref.: #66792]	Bacillus timonensis MM10403188	2547132138	draft	JGI IMG/M	1033734 tax ID	*

[Ref.: #18011]

GC-content

37.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus timonensis MM10403188 NCBI: GCA_000285535.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	76.552	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.273	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	69.611	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.337	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.509	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.579	no

Availability in culture collections External links

[Ref.: #18011]

Culture collection no.

DSM 25372, CSUR P162

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov.	Kokcha S, Mishra AK, Lagier JC, Million M, Leroy Q, Raoult D, Fournier PE	Stand Genomic Sci	10.4056/sigs.2776064	2012	*
Phylogeny	Bacillus aciditolerans sp. nov., isolated from paddy soil.	Ding MJ, Shang NJ, Xiao ZX, Shao F, Liu L, Huang Y, Zhou LK, Zhou JH, Zhang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003285	2019	*

References

#18011

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25372

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Bacillus timonensis MM10403188

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