"Bacillus timonensis" (DSM 25372, CSUR P162, 10403023)

BacDive ID 1320

Type strain

Strain Designation 10403023, MM10403188

Culture col. no. DSM 25372 CSUR P162 10403023 MM10403188

NCBI tax ID(s) 1033734

Special Collections DSMZ

History DSMZ <- J.-C. Lagier, Timone Hospital, Marseille, France; MM10403188 <- M. Million, URMITE, 27 bd Jean Moulin, 13385 Marseille Cedex 05, France

Links

"Bacillus timonensis" 10403023 is a bacterium that was isolated from human feces.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397955

DSM 25372

@ref 20215

Last LPSN update 2026-05-29 08:25:14

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species "Bacillus timonensis"

Full scientific name Bacillus timonensis Kokcha et al. 2012

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18011	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18011	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	91.548

Spore formation

@ref	Spore formation	Confidence
125438		92.337

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
18011	human feces	Homo sapiens	Senegal	SEN	Africa

Taxonmaps

69479

Global distribution of 16S sequence JF824810 (>99% sequence identity) for Bacillus timonensis from Microbeatlas

Aquatic Samples	17
Soil Samples	121
Animal Samples	24
Plant Samples	13
Total Samples	175

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM28553v1 assembly for Bacillus timonensis MM10403188	scaffold	GCA_000285535	1033734.3	2547132138	1033734	45.59

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18011	Bacillus timonensis strain 10403023 16S ribosomal RNA gene, partial sequence	JF824810	1472		1033734

GC content

18011

GC-content (mol%)37.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM28553v1 assembly for Bacillus timonensis MM10403188
NCBI: GCA_000285535

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.55	no
125439	gram_stain	BacteriaNetⓘ	variable	70.72	no
125439	motility	BacteriaNetⓘ	yes	62.28	no
125439	spore_formation	BacteriaNetⓘ	yes	76.31	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus timonensis MM10403188
NCBI: GCA_000285535.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	76.55	no
125438	anaerobic	anaerobicⓘ	no	92.27	no
125438	aerobic	aerobicⓘ	yes	69.61	no
125438	spore-forming	spore-formingⓘ	yes	92.34	no
125438	thermophilic	thermophileⓘ	no	91.51	no
125438	flagellated	motile2+ⓘ	yes	84.58	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Systematically investigating and identifying bacteriocins in the human gut microbiome.	Zhang D, Zou Y, Shi Y, Zhang J, Liu J, Wu G, Zhang J, Gao Y, Chen M, Li YX.	Cell Genom	10.1016/j.xgen.2025.100983	2025
	A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome.	Zhang D, Zhang J, Kalimuthu S, Liu J, Song ZM, He BB, Cai P, Zhong Z, Feng C, Neelakantan P, Li YX.	Microbiome	10.1186/s40168-023-01540-y	2023
Genetics	Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov.	Kokcha S, Mishra AK, Lagier JC, Million M, Leroy Q, Raoult D, Fournier PE	Stand Genomic Sci	10.4056/sigs.2776064	2012
Phylogeny	Bacillus aciditolerans sp. nov., isolated from paddy soil.	Ding MJ, Shang NJ, Xiao ZX, Shao F, Liu L, Huang Y, Zhou LK, Zhou JH, Zhang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003285	2019

References

#18011	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25372
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Bacillus timonensis" (DSM 25372, CSUR P162, 10403023)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000285535

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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