Strain identifier
BacDive ID: 1320
Type strain: 
Species: Bacillus timonensis
Strain Designation: 10403023, MM10403188
Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; MM10403188 <- M. Million, URMITE, 27 bd Jean Moulin, 13385 Marseille Cedex 05, France
NCBI tax ID(s): 1033734 (species)
version 8.1 (current version)
General
@ref: 18011
BacDive-ID: 1320
DSM-Number: 25372
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Bacillus timonensis 10403023 is a mesophilic bacterium that was isolated from human feces.
NCBI tax id
- NCBI tax id: 1033734
- Matching level: species
strain history
- @ref: 18011
- history: <- J.-C. Lagier, Timone Hospital, Marseille, France; MM10403188 <- M. Million, URMITE, 27 bd Jean Moulin, 13385 Marseille Cedex 05, France
doi: 10.13145/bacdive1320.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus timonensis
- full scientific name: Bacillus timonensis Kokcha et al. 2012
@ref: 18011
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus timonensis
full scientific name: Bacillus timonensis Kokcha et al. 2012
strain designation: 10403023, MM10403188
type strain: yes
Culture and growth conditions
culture medium
- @ref: 18011
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 18011
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 18011
- sample type: human feces
- country: Senegal
- origin.country: SEN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_1237.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_686;97_794;98_979;99_1237&stattab=map
- Last taxonomy: Bacillus timonensis
- 16S sequence: JF824810
- Sequence Identity:
- Total samples: 175
- soil counts: 121
- aquatic counts: 17
- animal counts: 24
- plant counts: 13
Sequence information
16S sequences
- @ref: 18011
- description: Bacillus timonensis strain 10403023 16S ribosomal RNA gene, partial sequence
- accession: JF824810
- length: 1472
- database: ena
- NCBI tax ID: 1033734
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Bacillus timonensis MM10403188 | GCA_000285535 | scaffold | ncbi | 1033734 |
| 66792 | Bacillus timonensis MM10403188 | 2547132138 | draft | img | 1033734 |
GC content
- @ref: 18011
- GC-content: 37.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.207 | no |
| flagellated | yes | 82.737 | no |
| gram-positive | yes | 87.487 | no |
| anaerobic | no | 97.512 | no |
| aerobic | yes | 84.664 | no |
| halophile | yes | 55.845 | no |
| spore-forming | yes | 94.164 | no |
| thermophile | no | 96.715 | no |
| glucose-util | yes | 86.244 | no |
| glucose-ferment | no | 88.214 | no |
External links
@ref: 18011
culture collection no.: DSM 25372, CSUR P162
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | topic2 | mesh |
|---|---|---|---|---|---|---|---|---|
| Genetics | 23408487 | Non contiguous-finished genome sequence and description of Bacillus timonensis sp. nov. | Kokcha S, Mishra AK, Lagier JC, Million M, Leroy Q, Raoult D, Fournier PE | Stand Genomic Sci | 10.4056/sigs.2776064 | 2012 | Phylogeny | |
| Phylogeny | 30816840 | Bacillus aciditolerans sp. nov., isolated from paddy soil. | Ding MJ, Shang NJ, Xiao ZX, Shao F, Liu L, Huang Y, Zhou LK, Zhou JH, Zhang Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003285 | 2019 | Transcriptome | Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza/*microbiology, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18011 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25372) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25372 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |