Name: Geobacillus sp. 12 AMOR 1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131725

Type strain:

Species: Geobacillus sp.

Strain Designation: 12 AMOR 1, 12AMOR1

Culture col. no.: DSM 100439, JCM 30829

Strain history: I. H. Steen; Centre for Geobiol., Univ. of Bergen, Norway; 12AMOR1.

NCBI tax ID(s): 1891658 (species)

SI-ID 401343

DSM 100439

Other strains from Geobacillus sp.

G. sp. DSM 3299, ATCC 15952
G. sp. T4, DSM 14791, CCRC 17200
G. sp. 4001, DSM 14431
G. sp. T80, DSM 15905
G. sp. F70, DSM 15390
G. sp. DM-2, DSM 18263, CGMCC 1.6128
G. sp. CS4, DSM 18542
G. sp. US105, DSM 19737
G. sp. 95, DSM 104629
G. sp. Geo-05, DSM 29729
G. sp. JCM 19604, NBRC 109937

Section

Geobacillus sp. 12 AMOR 1 is a spore-forming, thermophilic, Gram-positive bacterium that was isolated from thermophilic sediment bulk sample at the Troll Wall vent field, water depth of 470m.

Gram-positive
spore-forming
thermophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Geobacillus*
	Full Scientific Name (LPSN)	Geobacillus Nazina et al. 2001

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23521]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #23521]

Culture medium growth

[Ref.: #23521]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23521]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23521]			growth	55 °C
[Ref.: #67770]			growth	60 °C

[Ref.: #23521]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23521]	Sample type/isolated from	thermophilic sediment bulk sample at the Troll Wall vent field, water depth of 470m
[Ref.: #23521]	Country	Norway
[Ref.: #23521]	Country ISO 3 Code	NOR
[Ref.: #23521]	Continent	Europe
[Ref.: #23521]	Geographic location	71.2967°/5.7731°

[Ref.: #67770]	Sample type/isolated from	Hot deep-sea sediment (90C) collected from the Arctic Jan Mayen Vent Field
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Sediment
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Geobacillus sp. 12AMOR1	GCA_001028085	complete	GenBank	1629723 tax ID	*
[Ref.: #66792]	Geobacillus sp. 12AMOR1	1629723.9	plasmid	PATRIC	1629723 tax ID	*
[Ref.: #66792]	Geobacillus sp. 12AMOR1	1629723.3	complete	PATRIC	1629723 tax ID	*
[Ref.: #66792]	Geobacillus sp. 12AMOR1	2627853986	complete	JGI IMG/M	1629723 tax ID	*

[Ref.: #23521]	GC-content	47 mol%
[Ref.: #67770]	GC-content	52 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Geobacillus sp. 12AMOR1 PATRIC: 1629723.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Geobacillus sp. 12AMOR1 12AMOR1 NCBI: GCA_001028085.1
[Ref.: #69480]	motile	yes	89.261	no
[Ref.: #69480]	flagellated	yes	92.447	no
[Ref.: #69480]	gram-positive	yes	89.763	no
[Ref.: #69480]	anaerobic	no	97.195	no
[Ref.: #69480]	aerobic	yes	88.251	no
[Ref.: #69480]	halophile	no	93.453	no
[Ref.: #69480]	spore-forming	yes	96.177	no
[Ref.: #69480]	thermophile	yes	99.999	yes
[Ref.: #69480]	glucose-util	yes	90.683	no
[Ref.: #69480]	glucose-ferment	no	87.675	no

Availability in culture collections External links

[Ref.: #23521]

Culture collection no.

DSM 100439, JCM 30829

[Ref.: #90116]

SI-ID 401343

Literature:

	Title	Authors	Journal	DOI	Year
Enzymology	GtfC Enzyme of Geobacillus sp. 12AMOR1 Represents a Novel Thermostable Type of GH70 4,6-alpha-Glucanotransferase That Synthesizes a Linear Alternating (alpha1 --> 6)/(alpha1 --> 4) alpha-Glucan and Delays Bread Staling.	Te Poele EM, van der Hoek SE, Chatziioannou AC, Gerwig GJ, Duisterwinkel WJ, Oudhuis LAACM, Gangoiti J, Dijkhuizen L, Leemhuis H	J Agric Food Chem	10.1021/acs.jafc.1c03475	2021	*
Enzymology	A Thermostable Monoacylglycerol Lipase from Marine Geobacillus sp. 12AMOR1: Biochemical Characterization and Mutagenesis Study.	Tang W, Lan D, Zhao Z, Li S, Li X, Wang Y	Int J Mol Sci	10.3390/ijms20030780	2019	*
Genetics	Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site.	Wissuwa J, Stokke R, Fedoy AE, Lian K, Smalas AO, Steen IH	Stand Genomic Sci	10.1186/s40793-016-0137-y	2016	*
	Directed Mutation of Two Key Amino Acid Residues Alters the Product Structure of the New 4,6-alpha-Glucanotransferase from Bacillus sporothermodurans.	Yang W, Sheng L, Su L, Chen S, Wu J	J Agric Food Chem	10.1021/acs.jafc.1c05263	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23521

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100439

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90116

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401343.1 )

* These data were automatically processed and therefore are not curated

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Geobacillus sp. 12AMOR1

Geobacillus sp. 12AMOR1 12AMOR1

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