Geobacillus sp. (DSM 100439, 12 AMOR 1, JCM 30829)

Name: Geobacillus sp. (DSM 100439, 12 AMOR 1, JCM 30829)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131725

Type strain

Strain Designation 12 AMOR 1, 12AMOR1

Culture col. no. DSM 100439 12 AMOR 1 JCM 30829 12AMOR1

NCBI tax ID(s) 1891658

Special Collections DSMZ JCM

Links

12 AMOR 1 is a thermophilic prokaryote that was isolated from thermophilic sediment bulk sample at the Troll Wall vent field, water depth of 470m.

thermophilic genome sequence

Name and taxonomic classification

SI-ID 401343

DSM 100439

@ref 20215

Last LPSN update 2025-12-16 10:01:19

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Geobacillus

Full scientific name Geobacillus Nazina et al. 2001

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23521	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23521	positive	growth	55	thermophilic
67770	positive	growth	60	thermophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		91.085

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Sediment
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23521	thermophilic sediment bulk sample at the Troll Wall vent field, water depth of 470m	Norway	NOR	Europe	71.2967	5.7731 71.2967/5.7731
67770	Hot deep-sea sediment (90C) collected from the Arctic Jan Mayen Vent Field

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM102808v1 assembly for Geobacillus sp. 12AMOR1	complete	GCA_001028085	1629723.3	2627853986	1629723	74.41

Genome browser: GCA_001028085

GC content

@ref	GC-content (mol%)
23521	47
67770	52

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Geobacillus sp. 12AMOR1
NCBI: GCA_001028085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	81.00	no
125439	motility	BacteriaNetⓘ	yes	75.60	no
125439	gram_stain	BacteriaNetⓘ	variable	80.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	59.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Geobacillus sp. 12AMOR1 12AMOR1
NCBI: GCA_001028085.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.77	no
125438	anaerobic	anaerobicⓘ	no	95.79	no
125438	aerobic	aerobicⓘ	yes	78.25	no
125438	spore-forming	spore-formingⓘ	yes	91.09	no
125438	thermophilic	thermophileⓘ	yes	67.65	no
125438	flagellated	motile2+ⓘ	yes	82.76	no

Literature

Title	Authors	Journal	DOI	Year
Directed Mutation of Two Key Amino Acid Residues Alters the Product Structure of the New 4,6-alpha-Glucanotransferase from Bacillus sporothermodurans.	Yang W, Sheng L, Su L, Chen S, Wu J	J Agric Food Chem	10.1021/acs.jafc.1c05263	2021
GtfC Enzyme of Geobacillus sp. 12AMOR1 Represents a Novel Thermostable Type of GH70 4,6-alpha-Glucanotransferase That Synthesizes a Linear Alternating (alpha1 --> 6)/(alpha1 --> 4) alpha-Glucan and Delays Bread Staling.	Te Poele EM, van der Hoek SE, Chatziioannou AC, Gerwig GJ, Duisterwinkel WJ, Oudhuis LAACM, Gangoiti J, Dijkhuizen L, Leemhuis H	J Agric Food Chem	10.1021/acs.jafc.1c03475	2021
A Thermostable Monoacylglycerol Lipase from Marine Geobacillus sp. 12AMOR1: Biochemical Characterization and Mutagenesis Study.	Tang W, Lan D, Zhao Z, Li S, Li X, Wang Y	Int J Mol Sci	10.3390/ijms20030780	2019
Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site.	Wissuwa J, Stokke R, Fedoy AE, Lian K, Smalas AO, Steen IH	Stand Genomic Sci	10.1186/s40793-016-0137-y	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23521	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100439
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Geobacillus sp. (DSM 100439, 12 AMOR 1, JCM 30829)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001028085

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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