Name: Devosia sp. Root685
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131697

Type strain:

Species: Devosia sp.

Strain Designation: Root685

Culture col. no.: DSM 102404

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root685 <- Y. Bai

NCBI tax ID(s): 1871048 (species)

SI-ID 401160

DSM 102404

Special Collections

Other strains from Devosia sp.

Section

Devosia sp. Root685 is a Gram-negative bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Devosiaceae*
	Genus	*Devosia*
	Full Scientific Name (LPSN)	Devosia Nakagawa et al. 1996

Synonym

Vasilyevaea

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.269

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23493]

Culture medium

TRYPTONE YEAST EXTRACT GLUCOSE MEDIUM (TYG) (DSMZ Medium 1618)

[Ref.: #23493]

Culture medium growth

[Ref.: #23493]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23493]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23493]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.468

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23493]	Sample type/isolated from	roots of Arabidopsis thaliana ecotype Shakdara (Sha)
[Ref.: #23493]	Host species	Arabidopsis thaliana
[Ref.: #23493]	Geographic location (country and/or sea, region)	Cologne (50.958N 6.856E)
[Ref.: #23493]	Country	Germany
[Ref.: #23493]	Country ISO 3 Code	DEU
[Ref.: #23493]	Continent	Europe
[Ref.: #23493]	Geographic location	50.9580°/6.8560°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Devosia sp. Root685	GCA_001427875	scaffold	GenBank ENA	1736587 tax ID	*
[Ref.: #66792]	Devosia sp. Root685	1736587.3	wgs	PATRIC	1736587 tax ID	*
[Ref.: #66792]	Devosia sp. Root685	2643221591	draft	JGI IMG/M	1736587 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Devosia sp. Root685 Root685 NCBI: GCA_001427875.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.269	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.851	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.147	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.468	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.91	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	68.345	no

Availability in culture collections External links

[Ref.: #23493]

Culture collection no.

DSM 102404

[Ref.: #90091]

SI-ID 401160

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23493

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102404

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90091

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401160.1 )

* These data were automatically processed and therefore are not curated

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Devosia sp. Root685 Root685

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