Corynebacterium crudilactis (DSM 100882, CCUG 69192, LMG 29813)

Name: Corynebacterium crudilactis (DSM 100882, CCUG 69192, LMG 29813)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131684

Type strain

Strain Designation JZ16

Culture col. no. DSM 100882 CCUG 69192 LMG 29813 JZ16

NCBI tax ID(s) 1652495

Special Collections DSMZ CCUG Literature strains

Links

Corynebacterium crudilactis JZ16 is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from raw cow's milk.

Gram-positive rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397611

LMG 29813,DSM 100882,CCUG 69192

@ref 20215

Last LPSN update 2025-12-16 10:01:18

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium crudilactis

Full scientific name Corynebacterium crudilactis Zimmermann et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
25085	positive	0.9-1.8 µm	0.6-1.3 µm	rod-shaped
125438					90.5
125438	positive				91.205

Colony morphology

@ref	Colony size	Colony color	Medium used	Incubation period
25085	3 mm	beige	TSA (Trypticase soy agar)
63554				1 day

Multimedia

@ref:	23480
multimedia content:	DSM_100882.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_100882.jpg
caption:	Medium 693 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
25085	brain-heart infusion agar		supplemented with 0.25 g l-1 potassium tellurite and 1.0 % Tween 80
25085	TSA (Trypticase soy agar)
23480	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
23480	positive	growth	28	mesophilic
63554	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25085	anaerobe
63554	aerobe
125439	obligate aerobe	95

Spore formation

@ref	Spore formation	Confidence
25085
125439		95

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25085	17634 ChEBI	D-glucose	+	builds acid from
25085	16899 ChEBI	D-mannitol	+	builds acid from
25085	16988 ChEBI	D-ribose	+	builds acid from
25085	65327 ChEBI	D-xylose	-	builds acid from
25085	5291 ChEBI	gelatin	-	hydrolysis
25085	28087 ChEBI	glycogen	-	builds acid from
25085	17716 ChEBI	lactose	-	builds acid from
25085	17306 ChEBI	maltose	-	builds acid from
25085	17306 ChEBI	maltose	-	fermentation
25085	29864 ChEBI	mannitol	+	fermentation
25085	17632 ChEBI	nitrate	+	reduction
25085	17992 ChEBI	sucrose	-	builds acid from
25085	17992 ChEBI	sucrose	-	fermentation

Antibiotic resistance

@ref	ChEBI	Group ID	Metabolite	Resistance conc.
25085	28971		ampicillin	10 µg
25085	6104		kanamycin	30 µg
25085	7809		oxacillin	1 µg
25085	17076		streptomycin	10 µg
25085	102130	25	sulfamerazine	23.75 µg
25085	45924	25	trimethoprim	1.25 µg

Enzymes

@ref	Value	Activity	Ec
25085	acid phosphatase	-	3.1.3.2
25085	alkaline phosphatase	-	3.1.3.1
25085	alpha-glucosidase	-	3.2.1.20
25085	beta-galactosidase	-	3.2.1.23
25085	beta-glucosidase	+	3.2.1.21
25085	beta-glucuronidase	+	3.2.1.31
25085	catalase	+	1.11.1.6
25085	cytochrome oxidase	-	1.9.3.1
25085	esterase (C 4)	+
25085	esterase Lipase (C 8)	+
25085	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25085	pyrazinamidase	+	3.5.1.B15
25085	pyrrolidonyl arylamidase	-	3.4.19.3
25085	trypsin	-	3.4.21.4
25085	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Container (Reservoir)
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Fluids	#Milk

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture temperature
23480	raw cow's milk		Schlausenbach	Germany	DEU	Europe
25085	raw cow ’s milk from the bulk tank of a dairy farm						brain-heart infusion agar (Oxoid)	supplemented with 0.25 g l-1 potassium tellurite and 1.0 % Tween 80	30
63554	Raw milk from cow	2014-11-01	Rheinland-Pfalz,Schlausenbach	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence KR534194 (>99% sequence identity) for Corynebacterium crudilactis from Microbeatlas

Aquatic Samples	1445
Soil Samples	2143
Animal Samples	9718
Plant Samples	443
Total Samples	13749

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
23480	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM164301v1 assembly for Corynebacterium crudilactis JZ16	complete	GCA_001643015	1652495.9	2718217777	1652495	96.9

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23480	Corynebacterium crudilactis strain JZ16 16S ribosomal RNA gene, partial sequence	KR534194	1443		1652495

GC content

@ref	GC-content (mol%)	Method
25085	51.59	genome sequence analysis
23480	51.59	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium crudilactis JZ16
IMG: 2718217777

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.00	no
125439	motility	BacteriaNetⓘ	no	87.00	no
125439	gram_stain	BacteriaNetⓘ	positive	88.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium crudilactis JZ16
NCBI: GCA_001643015.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.21	yes
125438	anaerobic	anaerobicⓘ	no	94.09	no
125438	aerobic	aerobicⓘ	yes	80.21	no
125438	spore-forming	spore-formingⓘ	no	76.22	yes
125438	thermophilic	thermophileⓘ	no	94.60	yes
125438	flagellated	motile2+ⓘ	no	90.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium crudilactis sp. nov., isolated from raw cow's milk.	Zimmermann J, Ruckert C, Kalinowski J, Lipski A	Int J Syst Evol Microbiol	10.1099/ijsem.0.001509	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23480	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100882
#25085	J. R. Zimmermann, C.,Kalinowski, J.,Lipski, A.: Corynebacterium crudilactis sp. nov., isolated from raw cow's milk. IJSEM 66: 5288 - 5293 2016 ( DOI 10.1099/ijsem.0.001509 , PubMed 27666312 )
#63554	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 69192
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium crudilactis (DSM 100882, CCUG 69192, LMG 29813)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001643015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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