Name: Deinococcus oregonensis OR316-6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131685

Type strain:

Species: Deinococcus oregonensis

Strain Designation: OR316-6

Culture col. no.: DSM 17762, JCM 13503

Strain history: F. Garcia-Pichel OR316-6.

NCBI tax ID(s): 1805970 (species)

Section

Deinococcus oregonensis OR316-6 is a psychrophilic bacterium that was isolated from biological soil crust.

psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	"Deinococcus oregonensis"
	Full Scientific Name (LPSN)	Deinococcus oregonensis Gundlapally and Garcia-Pichel 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23481]

Culture medium

GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)

[Ref.: #23481]

Culture medium growth

[Ref.: #23481]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23481]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23481]			growth	20 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #23481]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8, MK-10, MK-9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23481]	Sample type/isolated from	biological soil crust
[Ref.: #23481]	Geographic location (country and/or sea, region)	Oregon, southwestern arid lands
[Ref.: #23481]	Country	USA
[Ref.: #23481]	Country ISO 3 Code	USA
[Ref.: #23481]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Biological soil crust, southwestern arid land
[Ref.: #67770]	Geographic location (country and/or sea, region)	OR
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT756665 (>99% sequence identity) for Deinococcus from Microbeatlas

Aquatic Samples	532
Soil Samples	262
Animal Samples	943
Plant Samples	248
Total Samples	1985

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23481]	Deinococcus sp. OR316-6 16S ribosomal RNA gene, partial sequence	KT756665	1470	ENA	1805970 tax ID

Availability in culture collections External links

[Ref.: #23481]

Culture collection no.

DSM 17762, JCM 13503

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Deinococcus oregonensis sp. nov., from biological soil crusts in the Southwestern arid lands of the United States of America.	Gundlapally SR, Garcia-Pichel F	Arch Microbiol	10.1007/s00203-016-1273-x	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23481

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17762

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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