Pseudomonas ficuserectae (ICMP 7848, DSM 6929, ATCC 35104)

Name: Pseudomonas ficuserectae (ICMP 7848, DSM 6929, ATCC 35104)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13168

Type strain

Strain Designation L7

Culture col. no. ICMP 7848 DSM 6929 ATCC 35104 CCUG 32779 CFBP 3224 6 more

NCBI tax ID(s) 53410

Special Collections DSMZ CCUG JCM

History <- ATCC <- M. Goto; L7 M. Goto strain L7.

Links

Pseudomonas ficuserectae L7 is a plant pathogen that was isolated from Ficus erectae.

plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265423

LMG 5694,ATCC 35104,ICMP 7848,JCM 2400,PDDCC 7848,DSM 6929,CCUG 32779,CFBP 3224,AS 1.1791,NCPPB 3693,NCCB 95041,LMD 95.41,CGMCC 1.1791

@ref 20215

Last LPSN update 2026-02-09 11:21:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas ficuserectae

Full scientific name Pseudomonas ficuserectae Goto 1983

BacDive ID	Other strains from **Pseudomonas ficuserectae** (2)	Type strain
163270	P. ficuserectae JCM 2401
163271	P. ficuserectae JCM 2402

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.5
125439	negative	99.8

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2910	REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)		Medium recipe at MediaDive	Name: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
2910	positive	growth	28
51178	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	93.46

Spore formation

@ref	Spore formation	Confidence
125439		99.4

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
2910	-	-	-	-	-	-	-	-	+	-	+	-	-	-	+	+	-	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
2910	Ficus erectae	Ficus erectae	Japan	JPN	Asia
51178	Ficus erecta		Japan	JPN	Asia
67770	Ficus erecta Thunb.	Ficus erecta

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
2910		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
67770	PfiICMP7848 assembly for Pseudomonas ficuserectae ICMP7848	scaffold	GCA_001400815	53410.3	2671180595	53410

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Pseudomonas ficuserectae gene for 16S rRNA, strain: JCM 2400	AB021378	1513		53410
20218	P.ficuserectae 16S rRNA gene	Z76661	1493		53410

GC content

@ref	GC-content (mol%)	Method
2910	59.0	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas ficuserectae ICMP 7848
NCBI: GCA_001400815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	88.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	89.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas ficuserectae strain ICMP7848
PATRIC: 53410.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	99.25	no
125438	spore-forming	spore-formingⓘ	no	82.10	no
125438	aerobic	aerobicⓘ	yes	93.46	no
125438	thermophilic	thermophileⓘ	no	98.50	no
125438	flagellated	motile2+ⓘ	yes	89.70	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Responses of Soybean Genes in the Substituted Segments of Segment Substitution Lines Following a Xanthomonas Infection.	Zou J, Zhang Z, Yu S, Kang Q, Shi Y, Wang J, Zhu R, Ma C, Chen L, Wang J, Li J, Li Q, Liu X, Zhu J, Wu X, Hu Z, Qi Z, Liu C, Chen Q, Xin D.	Front Plant Sci	10.3389/fpls.2020.00972	2020
Biotechnology	Fungicide sensitivity of grapevine bacteria with plant growth-promoting traits and antagonistic activity as non-target microorganisms.	Andreolli M, Lampis S, Tosi L, Marano V, Zapparoli G.	World J Microbiol Biotechnol	10.1007/s11274-023-03569-5	2023
Metabolism	High-performance liquid chromatography analyses of pyoverdin siderophores differentiate among phytopathogenic fluorescent Pseudomonas Species.	Bultreys A, Gheysen I, Wathelet B, Maraite H, de Hoffmann E.	Appl Environ Microbiol	10.1128/aem.69.2.1143-1153.2003	2003
Phylogeny	Pseudomonas quercus sp. nov, associated with leaf spot disease of Quercus mongolica.	Li Y, Wang S, Bian D, Sun S, Ma T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004800	2021
Phylogeny	Pseudomonas cerasi sp. nov. (non Griffin, 1911) isolated from diseased tissue of cherry.	Kaluzna M, Willems A, Pothier JF, Ruinelli M, Sobiczewski P, Pulawska J	Syst Appl Microbiol	10.1016/j.syapm.2016.05.005	2016

References

#2910	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6929
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#51178	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32779
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas ficuserectae (ICMP 7848, DSM 6929, ATCC 35104)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001400815

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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