Halopseudomonas sabulinigri (DSM 23971, JCM 14963, KCTC 22137)

Name: Halopseudomonas sabulinigri (DSM 23971, JCM 14963, KCTC 22137)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13169

Type strain

Strain Designation J64

Culture col. no. DSM 23971 JCM 14963 KCTC 22137 J64

NCBI tax ID(s) 472181

Special Collections DSMZ JCM KCTC Literature strains

History <- KCTC <- J.-W. Bae, KRIBB S. W. Roh J64.

Links

Halopseudomonas sabulinigri J64 is an aerobe, Gram-negative, motile bacterium that was isolated from black sand originating from black volcanic basalt rock.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 360526

JCM 14963,KCTC 22137,CECT 7679,DSM 23971

@ref 20215

Last LPSN update 2026-02-09 11:21:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Halopseudomonas

Species Halopseudomonas sabulinigri

Full scientific name Halopseudomonas sabulinigri (Kim et al. 2009) Rudra and Gupta 2021

Synonyms (2)

Neopseudomonas sabulinigri
Pseudomonas sabulinigri

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
32662	negative	1.75 µm	0.85 µm	rod-shaped
125438	negative					96

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17462	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17462	positive	growth	30
32662	positive	growth	04-37
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
32662	positive	growth	5.5-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

32662

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32662	NaCl	positive	growth	0-10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32662	37054 ChEBI	3-hydroxybutyrate	+	carbon source
32662	17128 ChEBI	adipate	+	carbon source
32662	22653 ChEBI	asparagine	+	carbon source
32662	16947 ChEBI	citrate	+	carbon source
32662	24996 ChEBI	lactate	+	carbon source
32662	51850 ChEBI	methyl pyruvate	+	carbon source
32662	26271 ChEBI	proline	+	carbon source
32662	17272 ChEBI	propionate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32662	acid phosphatase	+	3.1.3.2
32662	catalase	+	1.11.1.6
32662	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Volcanic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17462	black sand originating from black volcanic basalt rock	Jeju Island, Soesgoggak	Republic of Korea	KOR	Asia
67770	Black sand collected from Soesoggak	Jeju Island	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17462	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2675902958 annotated assembly for Halopseudomonas sabulinigri JCM 14963	chromosome	GCA_900105255	472181.4	2675902958	472181	84.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17462	Pseudomonas sabulinigri strain J64 16S ribosomal RNA gene, partial sequence	EU143352	1403		472181

GC content

@ref	GC-content (mol%)	Method
17462	58.1
67770	58.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas sabulinigri strain JCM 14963
PATRIC: 472181.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.00	yes
125438	anaerobic	anaerobicⓘ	no	96.83	yes
125438	spore-forming	spore-formingⓘ	no	88.81	no
125438	aerobic	aerobicⓘ	yes	87.18	yes
125438	thermophilic	thermophileⓘ	no	98.38	no
125438	flagellated	motile2+ⓘ	yes	85.63	no

Literature

References

#17462	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23971
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28873	IJSEM 38 2009 ( DOI 10.1099/ijs.0.65866-0 , PubMed 19126720 )
#32662	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28873
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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