Clostridium saudiense (DSM 27835, CSUR P697, JCC)

Name: Clostridium saudiense (DSM 27835, CSUR P697, JCC)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131499

Type strain

Strain Designation JCC

Culture col. no. DSM 27835 CSUR P697 JCC

NCBI tax ID(s) 1414720

Special Collections DSMZ

History DSMZ <- J.-C. Lagier, Timone Hospital, Marseille, France; JCC

Links

Clostridium saudiense JCC is an anaerobe bacterium that was isolated from feces from an obese 24-year-old man.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403526

DSM 27835

@ref 20215

Last LPSN update 2026-05-29 08:37:38

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium saudiense

Full scientific name Clostridium saudiense corrig. Angelakis et al. 2016

Synonyms (1)

Clostridium saudii

BacDive ID	Other strains from **Clostridium saudiense** (3)	Type strain
147798	C. saudiense CCUG 34252
150772	C. saudiense CCUG 42272
157224	C. saudiense CCUG 70686

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22726	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22726	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
22726	anaerobe
125439	facultative anaerobe	99.133

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Male

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
22726	feces from an obese 24-year-old man	Homo sapiens	Saudi Arabia	SAU	Asia

Taxonmaps

69479

Global distribution of 16S sequence HG726039 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	986
Soil Samples	733
Animal Samples	27361
Plant Samples	285
Total Samples	29365

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22726	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	JCC assembly for Clostridium saudiense JCC	contig	GCA_000577815	1414720.3	2619619241	1414720	58.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22726	Clostridium saudiense partial 16S rRNA gene, isolate JCC	HG726039	1478		1414720

GC content

@ref	GC-content (mol%)	Method
22726	27.9	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: JCC assembly for Clostridium saudiense JCC
NCBI: GCA_000577815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	99.13	no
125439	gram_stain	BacteriaNetⓘ	positive	69.22	no
125439	motility	BacteriaNetⓘ	yes	77.08	no
125439	spore_formation	BacteriaNetⓘ	yes	81.55	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22726	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27835
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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