Name: Clostridium saudiense JCC
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131499

Type strain:

Species: Clostridium saudiense

Strain Designation: JCC

Culture col. no.: DSM 27835, CSUR P697

Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JCC

NCBI tax ID(s): 1414720 (species)

SI-ID 403526

DSM 27835

Special Collections

Other strains from Clostridium saudiense

Section

Clostridium saudiense JCC is an anaerobe bacterium that was isolated from feces from an obese 24-year-old man.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium saudiense**
	Full Scientific Name (LPSN)	Clostridium saudiense corrig. Angelakis et al. 2016

Synonym

Clostridium saudii

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22726]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #22726]

Culture medium growth

[Ref.: #22726]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22726]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22726]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22726]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22726]	Sample type/isolated from	feces from an obese 24-year-old man
[Ref.: #22726]	Country	Saudi Arabia
[Ref.: #22726]	Country ISO 3 Code	SAU
[Ref.: #22726]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Male

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG726039 (>99% sequence identity) for Clostridium from Microbeatlas

Aquatic Samples	986
Soil Samples	733
Animal Samples	27361
Plant Samples	285
Total Samples	29365

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22726]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22726]	Clostridium saudiense partial 16S rRNA gene, isolate JCC	HG726039	1478	GenBank ENA	1414720 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Clostridium saudiense JCC	GCA_000577815	contig	GenBank ENA	1414720 tax ID	*
[Ref.: #66792]	Clostridium saudiense JCC	2619619241	draft	JGI IMG/M	1414720 tax ID	*

[Ref.: #22726]

GC-content

27.9 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #22726]

Culture collection no.

DSM 27835, CSUR P697

[Ref.: #89915]

SI-ID 403526

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22726

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27835

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89915

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403526.1 )

* These data were automatically processed and therefore are not curated

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