Strain identifier
BacDive ID: 131499
Type strain: 
Species: Clostridium saudiense
Strain Designation: JCC
Strain history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JCC
NCBI tax ID(s): 1414720 (species)
version 8.1 (current version)
General
@ref: 22726
BacDive-ID: 131499
DSM-Number: 27835
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium saudiense JCC is an anaerobe, mesophilic bacterium that was isolated from feces from an obese 24-year-old man.
NCBI tax id
- NCBI tax id: 1414720
- Matching level: species
strain history
- @ref: 22726
- history: <- J.-C. Lagier, Timone Hospital, Marseille, France; JCC
doi: 10.13145/bacdive131499.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium saudiense
- full scientific name: Clostridium saudiense corrig. Angelakis et al. 2016
synonyms
- @ref: 20215
- synonym: Clostridium saudii
@ref: 22726
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium saudiense
full scientific name: Clostridium saudiense Angelakis et al. 2016
strain designation: JCC
type strain: yes
Culture and growth conditions
culture medium
- @ref: 22726
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
- @ref: 22726
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 22726
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 22726
- sample type: feces from an obese 24-year-old man
- country: Saudi Arabia
- origin.country: SAU
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Human | #Male |
taxonmaps
- @ref: 69479
- File name: preview.99_4385.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1253;97_1486;98_1811;99_4385&stattab=map
- Last taxonomy: Clostridium
- 16S sequence: HG726039
- Sequence Identity:
- Total samples: 29365
- soil counts: 733
- aquatic counts: 986
- animal counts: 27361
- plant counts: 285
Safety information
risk assessment
- @ref: 22726
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22726
- description: Clostridium saudiense partial 16S rRNA gene, isolate JCC
- accession: HG726039
- length: 1478
- database: ena
- NCBI tax ID: 1414720
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium saudiense JCC | GCA_000577815 | contig | ncbi | 1414720 |
| 66792 | Clostridium saudiense JCC | 2619619241 | draft | img | 1414720 |
GC content
- @ref: 22726
- GC-content: 27.9
- method: sequence analysis
External links
@ref: 22726
culture collection no.: DSM 27835, CSUR P697
straininfo link
- @ref: 89915
- straininfo: 403526
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22726 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27835 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27835) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89915 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403526.1 |