Mixta theicola (DSM 29212, NBRC 110557, QC88-366)

Name: Mixta theicola (DSM 29212, NBRC 110557, QC88-366)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131470

Type strain

Strain Designation QC88-366

Culture col. no. DSM 29212 NBRC 110557 QC88-366

NCBI tax ID(s) 1458355

Special Collections DSMZ

History <- Y. Tanaka, Mitsui Norin Co. Ltd., Fujieda, Shizuoka, Japan; QC88-366

Links

Mixta theicola QC88-366 is a bacterium that was isolated from black tea extract heated at 90° C.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 396465

LMG 29103,DSM 29212,NBRC 110557,CCUG 75196

@ref 20215

Last LPSN update 2026-02-09 11:31:28

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Erwiniaceae

Genus Mixta

Species Mixta theicola

Full scientific name Mixta theicola (Tanaka et al. 2015) Palmer et al. 2018

Synonyms (1)

Pantoea theicola

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100
125439	negative	98.7

Multimedia

@ref:	22697
multimedia content:	DSM_29212.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_29212.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22697	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22697	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	97.8

Spore formation

@ref	Spore formation	Confidence
125439		96.5

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68368	17632 ChEBI	nitrate	+	reduction	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
22697	+	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	+	+	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host Body Product	#Plant

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
22697	black tea extract heated at 90° C	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22697	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3016037v1 assembly for Mixta theicola NBRC 110557	scaffold	GCA_030160375	1458355.6	8117140583	1458355	68.05
66792	ASM289592v1 assembly for Mixta theicola QC88-366	contig	GCA_002895925	1458355.3	2791355152	1458355	64.35

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22697	Pantoea theicola gene for 16S ribosomal RNA, partial sequence	AB907776	1494		1458355

GC content

@ref	GC-content (mol%)	Method
22697	57.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mixta theicola QC88-366
NCBI: GCA_002895925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.50	no
125439	motility	BacteriaNetⓘ	yes	75.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pantoea theicola strain QC88-366
PATRIC: 1458355.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	96.34	no
125438	spore-forming	spore-formingⓘ	no	89.95	no
125438	aerobic	aerobicⓘ	no	64.12	no
125438	thermophilic	thermophileⓘ	no	99.55	yes
125438	flagellated	motile2+ⓘ	yes	81.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome and description of Mixta mediterraneensis strain Marseille-Q2057^T sp.nov., a new bacterium isolated from human healthy skin.	Boxberger M, Antezack A, Magnien S, Cassir N, La Scola B.	New Microbes New Infect	10.1016/j.nmni.2021.100840	2021
Phylogeny	Pantoea alhagi, a novel endophytic bacterium with ability to improve growth and drought tolerance in wheat.	Chen C, Xin K, Liu H, Cheng J, Shen X, Wang Y, Zhang L	Sci Rep	10.1038/srep41564	2017
Phylogeny	Mixta tenebrionis sp. nov., isolated from the gut of the plastic-eating mealworm Tenebrio molitor L.	Xia M, Wang J, Huo YX, Yang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003826	2020
Phylogeny	Pantoea theicola sp. nov., isolated from black tea.	Kato Tanaka Y, Horie N, Mochida K, Yoshida Y, Okugawa E, Nanjo F	Int J Syst Evol Microbiol	10.1099/ijsem.0.000412	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22697	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29212
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mixta theicola (DSM 29212, NBRC 110557, QC88-366)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030160375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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