Name: Mixta theicola QC88-366
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131470

Type strain:

Species: Mixta theicola

Strain Designation: QC88-366

Culture col. no.: DSM 29212, NBRC 110557

Strain history: <- Y. Tanaka, Mitsui Norin Co. Ltd., Fujieda, Shizuoka, Japan; QC88-366

NCBI tax ID(s): 1458355 (species)

SI-ID 396465

LMG 29103, DSM 29212, NBRC 110557, CCUG 75196

Section

Mixta theicola QC88-366 is a mesophilic, motile bacterium that was isolated from black tea extract heated at 90° C.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Mixta*
	Species	**Mixta theicola**
	Full Scientific Name (LPSN)	Mixta theicola (Tanaka et al. 2015) Palmer et al. 2018

Synonym

Pantoea theicola

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.97

[Ref.: #69480]	Motility	yes Confidence in %97.704

Multimedia content

[Ref.: #22697]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22697]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #22697]

Culture medium growth

[Ref.: #22697]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22697]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22697]			growth	28 °C

[Ref.: #22697]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.758

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	nitrate ChEBI	+	reduction	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	dinitrogen ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E
[Ref.: #68368]	nitrite ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #22697]	18071	+	-	-	-	-	-	-	-	-	-	-	+	+	+	-	+	-	+	+	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22697]	Sample type/isolated from	black tea extract heated at 90° C
[Ref.: #22697]	Country	Japan
[Ref.: #22697]	Country ISO 3 Code	JPN
[Ref.: #22697]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body Product

#Plant

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22697]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22697]	Pantoea theicola gene for 16S ribosomal RNA, partial sequence	AB907776	1494	ENA	1458355 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mixta theicola QC88-366	GCA_002895925	contig	GenBank	1458355 tax ID	*
[Ref.: #66792]	Pantoea theicola strain QC88-366	1458355.3	wgs	PATRIC	1458355 tax ID	*
[Ref.: #66792]	Mixta theicola QC88-366	2791355152	draft	JGI IMG/M	1458355 tax ID	*

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GC-content

57.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pantoea theicola strain QC88-366 PATRIC: 1458355.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pantoea theicola strain QC88-366 PATRIC: 1458355.3
[Ref.: #69480]	motile	yes	92.686	no
[Ref.: #69480]	gram-positive	no	97.991	no
[Ref.: #69480]	anaerobic	no	98.824	no
[Ref.: #69480]	halophile	no	88.585	no
[Ref.: #69480]	spore-forming	no	93.869	no
[Ref.: #69480]	glucose-util	yes	94.509	no
[Ref.: #69480]	thermophile	no	97.604	no
[Ref.: #69480]	aerobic	no	65.758	no
[Ref.: #69480]	flagellated	no	66.129	no
[Ref.: #69480]	glucose-ferment	yes	89.677	yes

Availability in culture collections External links

[Ref.: #22697]

Culture collection no.

DSM 29212, NBRC 110557

[Ref.: #89889]

SI-ID 396465

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mixta tenebrionis sp. nov., isolated from the gut of the plastic-eating mealworm Tenebrio molitor L.	Xia M, Wang J, Huo YX, Yang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003826	2020	*
Phylogeny	Pantoea theicola sp. nov., isolated from black tea.	Kato Tanaka Y, Horie N, Mochida K, Yoshida Y, Okugawa E, Nanjo F	Int J Syst Evol Microbiol	10.1099/ijsem.0.000412	2015	*
Phylogeny	Pantoea alhagi, a novel endophytic bacterium with ability to improve growth and drought tolerance in wheat.	Chen C, Xin K, Liu H, Cheng J, Shen X, Wang Y, Zhang L	Sci Rep	10.1038/srep41564	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22697

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29212

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89889

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396465.1 )

* These data were automatically processed and therefore are not curated

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Pantoea theicola strain QC88-366

Pantoea theicola strain QC88-366

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