Strain identifier

BacDive ID: 131470

Type strain: Yes

Species: Mixta theicola

Strain Designation: QC88-366

Strain history: <- Y. Tanaka, Mitsui Norin Co. Ltd., Fujieda, Shizuoka, Japan; QC88-366

NCBI tax ID(s): 1458355 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22697

BacDive-ID: 131470

DSM-Number: 29212

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Mixta theicola QC88-366 is a mesophilic, motile bacterium that was isolated from black tea extract heated at 90° C.

NCBI tax id

  • NCBI tax id: 1458355
  • Matching level: species

strain history

  • @ref: 22697
  • history: <- Y. Tanaka, Mitsui Norin Co. Ltd., Fujieda, Shizuoka, Japan; QC88-366

doi: 10.13145/bacdive131470.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Mixta
  • species: Mixta theicola
  • full scientific name: Mixta theicola (Tanaka et al. 2015) Palmer et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Pantoea theicola

@ref: 22697

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Mixta

species: Mixta theicola

full scientific name: Mixta theicola (Tanaka et al. 2015) Palmer et al. 2018

strain designation: QC88-366

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes97.704
6948099.97negative

multimedia

  • @ref: 22697
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29212.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 22697
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 22697
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.758

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
22697+----------+++-+-+++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 22697
  • sample type: black tea extract heated at 90° C
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Plant

Safety information

risk assessment

  • @ref: 22697
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22697
  • description: Pantoea theicola gene for 16S ribosomal RNA, partial sequence
  • accession: AB907776
  • length: 1494
  • database: ena
  • NCBI tax ID: 1458355

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mixta theicola QC88-366GCA_002895925contigncbi1458355
66792Pantoea theicola strain QC88-3661458355.3wgspatric1458355
66792Mixta theicola QC88-3662791355152draftimg1458355

GC content

  • @ref: 22697
  • GC-content: 57.2
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes92.686no
gram-positiveno97.991no
anaerobicno98.824no
halophileno88.585no
spore-formingno93.869no
glucose-utilyes94.509no
thermophileno97.604no
aerobicno65.758no
flagellatedno66.129no
glucose-fermentyes89.677yes

External links

@ref: 22697

culture collection no.: DSM 29212, NBRC 110557

straininfo link

  • @ref: 89889
  • straininfo: 396465

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26297578Pantoea theicola sp. nov., isolated from black tea.Kato Tanaka Y, Horie N, Mochida K, Yoshida Y, Okugawa E, Nanjo FInt J Syst Evol Microbiol10.1099/ijsem.0.0004122015Bacterial Typing Techniques, Base Composition, Camellia sinensis, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Genes, Bacterial, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Pantoea/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tea/*microbiologyBiotechnology
Phylogeny28128318Pantoea alhagi, a novel endophytic bacterium with ability to improve growth and drought tolerance in wheat.Chen C, Xin K, Liu H, Cheng J, Shen X, Wang Y, Zhang LSci Rep10.1038/srep415642017*Adaptation, Biological, Base Composition, *Droughts, Fatty Acids/metabolism, Genes, Bacterial, Genome, Bacterial, Multilocus Sequence Typing, Pantoea/classification/*physiology, Phenotype, Phylogeny, Plant Roots/microbiology, *Stress, Physiological, *Symbiosis, Triticum/*microbiology/*physiologyGenetics
Phylogeny31675291Mixta tenebrionis sp. nov., isolated from the gut of the plastic-eating mealworm Tenebrio molitor L.Xia M, Wang J, Huo YX, Yang YInt J Syst Evol Microbiol10.1099/ijsem.0.0038262020Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Gastrointestinal Tract/*microbiology, Nucleic Acid Hybridization, *Phylogeny, *Plastics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tenebrio/*microbiologyTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22697Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29212Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29212)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89889Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396465.1