Strain identifier
BacDive ID: 131470
Type strain:
Species: Mixta theicola
Strain Designation: QC88-366
Strain history: <- Y. Tanaka, Mitsui Norin Co. Ltd., Fujieda, Shizuoka, Japan; QC88-366
NCBI tax ID(s): 1458355 (species)
General
@ref: 22697
BacDive-ID: 131470
DSM-Number: 29212
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Mixta theicola QC88-366 is a mesophilic, motile bacterium that was isolated from black tea extract heated at 90° C.
NCBI tax id
- NCBI tax id: 1458355
- Matching level: species
strain history
- @ref: 22697
- history: <- Y. Tanaka, Mitsui Norin Co. Ltd., Fujieda, Shizuoka, Japan; QC88-366
doi: 10.13145/bacdive131470.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Erwiniaceae
- genus: Mixta
- species: Mixta theicola
- full scientific name: Mixta theicola (Tanaka et al. 2015) Palmer et al. 2018
synonyms
- @ref: 20215
- synonym: Pantoea theicola
@ref: 22697
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Erwiniaceae
genus: Mixta
species: Mixta theicola
full scientific name: Mixta theicola (Tanaka et al. 2015) Palmer et al. 2018
strain designation: QC88-366
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 97.704 | |
69480 | 99.97 | negative |
multimedia
- @ref: 22697
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29212.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 22697
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 22697
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.758 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 17632 | nitrate | + | reduction |
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | + | fermentation |
68368 | 28053 | melibiose | + | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | + | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 17997 | dinitrogen | no |
68368 | 16301 | nitrite | yes |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | NO2 | N2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22697 | + | - | - | - | - | - | - | - | - | - | - | + | + | + | - | + | - | + | + | + | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 22697
- sample type: black tea extract heated at 90° C
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
- Cat1: #Host Body Product
- Cat2: #Plant
Safety information
risk assessment
- @ref: 22697
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22697
- description: Pantoea theicola gene for 16S ribosomal RNA, partial sequence
- accession: AB907776
- length: 1494
- database: ena
- NCBI tax ID: 1458355
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Mixta theicola QC88-366 | GCA_002895925 | contig | ncbi | 1458355 |
66792 | Pantoea theicola strain QC88-366 | 1458355.3 | wgs | patric | 1458355 |
66792 | Mixta theicola QC88-366 | 2791355152 | draft | img | 1458355 |
GC content
- @ref: 22697
- GC-content: 57.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 92.686 | no |
gram-positive | no | 97.991 | no |
anaerobic | no | 98.824 | no |
halophile | no | 88.585 | no |
spore-forming | no | 93.869 | no |
glucose-util | yes | 94.509 | no |
thermophile | no | 97.604 | no |
aerobic | no | 65.758 | no |
flagellated | no | 66.129 | no |
glucose-ferment | yes | 89.677 | yes |
External links
@ref: 22697
culture collection no.: DSM 29212, NBRC 110557
straininfo link
- @ref: 89889
- straininfo: 396465
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 26297578 | Pantoea theicola sp. nov., isolated from black tea. | Kato Tanaka Y, Horie N, Mochida K, Yoshida Y, Okugawa E, Nanjo F | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000412 | 2015 | Bacterial Typing Techniques, Base Composition, Camellia sinensis, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Genes, Bacterial, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Pantoea/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tea/*microbiology | Biotechnology |
Phylogeny | 28128318 | Pantoea alhagi, a novel endophytic bacterium with ability to improve growth and drought tolerance in wheat. | Chen C, Xin K, Liu H, Cheng J, Shen X, Wang Y, Zhang L | Sci Rep | 10.1038/srep41564 | 2017 | *Adaptation, Biological, Base Composition, *Droughts, Fatty Acids/metabolism, Genes, Bacterial, Genome, Bacterial, Multilocus Sequence Typing, Pantoea/classification/*physiology, Phenotype, Phylogeny, Plant Roots/microbiology, *Stress, Physiological, *Symbiosis, Triticum/*microbiology/*physiology | Genetics |
Phylogeny | 31675291 | Mixta tenebrionis sp. nov., isolated from the gut of the plastic-eating mealworm Tenebrio molitor L. | Xia M, Wang J, Huo YX, Yang Y | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003826 | 2020 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Gastrointestinal Tract/*microbiology, Nucleic Acid Hybridization, *Phylogeny, *Plastics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tenebrio/*microbiology | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22697 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29212 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29212) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68368 | Automatically annotated from API 20E | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
89889 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396465.1 |