Name: Wenjunlia tyrosinilytica NEAU-Jh3-20
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131415

Type strain:

Species: Wenjunlia tyrosinilytica

Strain Designation: NEAU-Jh3-20

Culture col. no.: DSM 42170, CGMCC 4.7201

Strain history: <- C. Liu; School of Life Science,Harbin,China; NEAU-Jh3-20 <- J. Zhao

NCBI tax ID(s): 1544741 (species)

SI-ID 402822

DSM 42170

Special Collections

DSMZ

Section

Wenjunlia tyrosinilytica NEAU-Jh3-20 is a spore-forming bacterium that was isolated from river sediment.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Wenjunlia*
	Species	**Wenjunlia tyrosinilytica**
	Full Scientific Name (LPSN)	Wenjunlia tyrosinilytica (Zhao et al. 2015) Madhaiyan et al. 2022

Synonym

Streptomyces tyrosinilyticus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22642]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #22642]

Culture medium growth

[Ref.: #22642]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22642]

Culture medium composition

expand / minimize

[Ref.: #22642]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #22642]

Culture medium growth

[Ref.: #22642]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22642]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22642]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22642]	Sample type/isolated from	river sediment
[Ref.: #22642]	Geographic location (country and/or sea, region)	Jilin Province, Jiaohe (43° 75' N 127° 33' E)
[Ref.: #22642]	Country	China
[Ref.: #22642]	Country ISO 3 Code	CHN
[Ref.: #22642]	Continent	Asia
[Ref.: #22642]	Geographic location	44.2500°/127.5500°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM000839 (>99% sequence identity) for Streptomyces tyrosinilyticus subclade from Microbeatlas

Aquatic Samples	37
Soil Samples	365
Animal Samples	22
Plant Samples	52
Total Samples	476

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22642]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22642]	Wenjunlia tyrosinilytica strain NEAU-Jh3-20 16S ribosomal RNA gene, partial sequence	KM000839	1480	GenBank ENA	1544741 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Wenjunlia tyrosinilytica CGMCC 4.7201	GCA_014646055	contig	GenBank ENA	1544741 tax ID	*
[Ref.: #66792]	Streptomyces tyrosinilyticus strain CGMCC 4.7201	1544741.3	wgs	PATRIC	1544741 tax ID	*

[Ref.: #22642]

GC-content

72.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces tyrosinilyticus strain CGMCC 4.7201 PATRIC: 1544741.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces tyrosinilyticus strain CGMCC 4.7201 PATRIC: 1544741.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.537	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.262	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	87.57	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.597	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.478	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

[Ref.: #22642]

Culture collection no.

DSM 42170, CGMCC 4.7201

[Ref.: #89843]

SI-ID 402822

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces tyrosinilyticus sp. nov., a novel actinomycete isolated from river sediment.	Zhao J, Guo L, Liu C, Bai L, Han C, Li J, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijs.0.000385	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22642

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42170

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89843

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402822.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces tyrosinilyticus strain CGMCC 4.7201

Streptomyces tyrosinilyticus strain CGMCC 4.7201

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