Strain identifier
BacDive ID: 131415
Type strain: 
Species: Wenjunlia tyrosinilytica
Strain Designation: NEAU-Jh3-20
Strain history: <- C. Liu; School of Life Science,Harbin,China; NEAU-Jh3-20 <- J. Zhao
NCBI tax ID(s): 1544741 (species)
version 8.1 (current version)
General
@ref: 22642
BacDive-ID: 131415
DSM-Number: 42170
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Wenjunlia tyrosinilytica NEAU-Jh3-20 is a spore-forming, mesophilic bacterium that was isolated from river sediment.
NCBI tax id
- NCBI tax id: 1544741
- Matching level: species
strain history
- @ref: 22642
- history: <- C. Liu; School of Life Science,Harbin,China; NEAU-Jh3-20 <- J. Zhao
doi: 10.13145/bacdive131415.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Wenjunlia
- species: Wenjunlia tyrosinilytica
- full scientific name: Wenjunlia tyrosinilytica (Zhao et al. 2015) Madhaiyan et al. 2022
synonyms
- @ref: 20215
- synonym: Streptomyces tyrosinilyticus
@ref: 22642
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces tyrosinilyticus
full scientific name: Streptomyces tyrosinilyticus Zhao et al. 2015
strain designation: NEAU-Jh3-20
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 96.046 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22642 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 22642 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
- @ref: 22642
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 22642
- sample type: river sediment
- geographic location: Jilin Province, Jiaohe (43° 75' N 127° 33' E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 44.25
- longitude: 127.55
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #River (Creek) |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_43837.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_19224;97_25090;98_31813;99_43837&stattab=map
- Last taxonomy: Streptomyces tyrosinilyticus subclade
- 16S sequence: KM000839
- Sequence Identity:
- Total samples: 476
- soil counts: 365
- aquatic counts: 37
- animal counts: 22
- plant counts: 52
Safety information
risk assessment
- @ref: 22642
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22642
- description: Streptomyces tyrosinilyticus strain NEAU-Jh3-20 16S ribosomal RNA gene, partial sequence
- accession: KM000839
- length: 1480
- database: ena
- NCBI tax ID: 1544741
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Wenjunlia tyrosinilytica CGMCC 4.7201 | GCA_014646055 | contig | ncbi | 1544741 |
| 66792 | Streptomyces tyrosinilyticus strain CGMCC 4.7201 | 1544741.3 | wgs | patric | 1544741 |
GC content
- @ref: 22642
- GC-content: 72.2
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | no | 94.848 | no |
| gram-positive | yes | 87.344 | no |
| anaerobic | no | 98.886 | no |
| aerobic | yes | 86.62 | no |
| halophile | no | 94.416 | no |
| spore-forming | yes | 94.624 | no |
| thermophile | no | 95.786 | yes |
| glucose-util | yes | 89.572 | no |
| flagellated | no | 97.522 | no |
| glucose-ferment | no | 91.29 | no |
External links
@ref: 22642
culture collection no.: DSM 42170, CGMCC 4.7201
straininfo link
- @ref: 89843
- straininfo: 402822
literature
- topic: Phylogeny
- Pubmed-ID: 26297662
- title: Streptomyces tyrosinilyticus sp. nov., a novel actinomycete isolated from river sediment.
- authors: Zhao J, Guo L, Liu C, Bai L, Han C, Li J, Xiang W, Wang X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000385
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers, Sequence Analysis, DNA, *Streptomyces/classification
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22642 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42170 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42170) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89843 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402822.1 |