Edwardsiella anguillarum (DSM 27202, CCTCC AB 2013118, CCUG 64215)

Name: Edwardsiella anguillarum (DSM 27202, CCTCC AB 2013118, CCUG 64215)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131380

Type strain

Strain Designation ET080813

Culture col. no. DSM 27202 CCTCC AB 2013118 CCUG 64215 MCCC 1K00238 ET080813

NCBI tax ID(s) 1821960

Special Collections DSMZ CCUG

Links

Edwardsiella anguillarum ET080813 is an aerobe, mesophilic human pathogen that was isolated from diseased Japanese eel.

aerobe mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397420

DSM 27202,CCUG 64215

@ref 20215

Last LPSN update 2025-12-16 10:01:14

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Hafniaceae

Genus Edwardsiella

Species Edwardsiella anguillarum

Full scientific name Edwardsiella anguillarum Shao et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.5
125439	negative	99.6
125439		91.9

Colony morphology

63102

Incubation period1 day

Multimedia

@ref:	22607
multimedia content:	DSM_27202.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_27202.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22607	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
22607	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22607	positive	growth	28	mesophilic
22607	positive	growth	30	mesophilic
63102	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

63102

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	cytochrome oxidase	+	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
22607	-	-	+	+	+	-	-	-	+	-	-	+	+	-	-	-	-	-	-	+/-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fishes

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
22607	diseased Japanese eel		Fujian Province	China	CHN	Asia
63102	Japanese eel,diseased	2008-05-17	Fuijan province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence GQ180183 (>99% sequence identity) for Edwardsiella from Microbeatlas

Aquatic Samples	2305
Soil Samples	509
Animal Samples	19360
Plant Samples	542
Total Samples	22716

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
22607			1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM26476v2 assembly for Edwardsiella anguillarum ET080813	complete	GCA_000264765	667120.5	2547132206	667120	92.36
66792	ASM880181v1 assembly for Edwardsiella anguillarum CCUG 64215	contig	GCA_008801815	1821960.6		1821960	50.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22607	Edwardsiella anguillarum ET080813 16S ribosomal RNA gene, partial sequence	GQ180183	1508		667120

GC content

@ref	GC-content (mol%)	Method
22607	58.72	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Edwardsiella anguillarum CCUG 64215
NCBI: GCA_008801815

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	yes	91.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative aerobe	76.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Edwardsiella anguillarum ET080813 ET080813
NCBI: GCA_000264765.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	90.62	no
125438	aerobic	aerobicⓘ	no	73.83	yes
125438	spore-forming	spore-formingⓘ	no	87.70	no
125438	thermophilic	thermophileⓘ	no	97.98	yes
125438	flagellated	motile2+ⓘ	yes	71.72	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics characterization of a highly virulent Edwardsiella strain ET080813(T) encoding two distinct T3SS and three T6SS gene clusters: Propose a novel species as Edwardsiella anguillarum sp. nov.	Shao S, Lai Q, Liu Q, Wu H, Xiao J, Shao Z, Wang Q, Zhang Y	Syst Appl Microbiol	10.1016/j.syapm.2014.10.008	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22607	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27202
#63102	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 64215
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Edwardsiella anguillarum (DSM 27202, CCTCC AB 2013118, CCUG 64215)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000264765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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