Name: Edwardsiella anguillarum ET080813
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131380

Type strain:

Species: Edwardsiella anguillarum

Strain Designation: ET080813

Culture col. no.: DSM 27202, CCTCC AB 2013118, CCUG 64215, MCCC 1K00238

Strain history: <- Q. Wang, East China Univ. of Science and Technol., Shanghai, P.R. China; CCTCC AB 2013118

NCBI tax ID(s): 1821960 (species)

SI-ID 397420

DSM 27202, CCUG 64215

Section

Edwardsiella anguillarum ET080813 is an aerobe, mesophilic, motile human pathogen that was isolated from diseased Japanese eel.

motile
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Hafniaceae*
	Genus	*Edwardsiella*
	Species	**Edwardsiella anguillarum**
	Full Scientific Name (LPSN)	Edwardsiella anguillarum Shao et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #69480]	Motility	yes Confidence in %97.157

[Ref.: #63102]

Incubation period

1 day

Multimedia content

[Ref.: #22607]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22607]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #22607]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #22607]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22607]	growth	28 °C
[Ref.: #22607]	growth	30 °C
[Ref.: #63102]	growth	30 °C

[Ref.: #22607]	Temperature range	mesophilic
[Ref.: #63102]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63102]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.753

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #22607]	17951	-	-	+	+	+	-	-	-	+	-	-	+	+	-	-	-	-	-	-	+/-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22607]	Sample type/isolated from	diseased Japanese eel
[Ref.: #22607]	Geographic location (country and/or sea, region)	Fujian Province
[Ref.: #22607]	Country	China
[Ref.: #22607]	Country ISO 3 Code	CHN
[Ref.: #22607]	Continent	Asia

[Ref.: #63102]	Sample type/isolated from	Japanese eel,diseased
[Ref.: #63102]	Sampling date	2008-05-17
[Ref.: #63102]	Geographic location (country and/or sea, region)	Fuijan province
[Ref.: #63102]	Country	China
[Ref.: #63102]	Country ISO 3 Code	CHN
[Ref.: #63102]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Fishes

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ180183 (>99% sequence identity) for Edwardsiella from Microbeatlas

Aquatic Samples	2305
Soil Samples	509
Animal Samples	19360
Plant Samples	542
Total Samples	22716

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22607]	Pathogenicity (human)	yes
[Ref.: #22607]	Pathogenicity (animal)	yes
[Ref.: #22607]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22607]	Edwardsiella anguillarum ET080813 16S ribosomal RNA gene, partial sequence	GQ180183	1508	ENA	667120 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Edwardsiella anguillarum ET080813	GCA_000264765	contig	GenBank	667120 tax ID	*
[Ref.: #66792]	Edwardsiella anguillarum CCUG 64215	GCA_008801815	contig	GenBank	1821960 tax ID	*
[Ref.: #66792]	Edwardsiella anguillarum ET080813	667120.10	plasmid	PATRIC	667120 tax ID	*
[Ref.: #66792]	Edwardsiella anguillarum ET080813	667120.9	plasmid	PATRIC	667120 tax ID	*
[Ref.: #66792]	Edwardsiella anguillarum strain CCUG 64215	1821960.6	wgs	PATRIC	1821960 tax ID	*

[Ref.: #22607]

GC-content

58.72 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Edwardsiella anguillarum strain CCUG 64215 PATRIC: 1821960.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Edwardsiella anguillarum ET080813 ET080813 NCBI: GCA_000264765.1
[Ref.: #69480]	motile	yes	90.801	no
[Ref.: #69480]	flagellated	yes	67.514	no
[Ref.: #69480]	gram-positive	no	98.118	no
[Ref.: #69480]	anaerobic	no	78.342	yes
[Ref.: #69480]	aerobic	no	60.215	no
[Ref.: #69480]	halophile	no	86.985	no
[Ref.: #69480]	spore-forming	no	93.698	no
[Ref.: #69480]	thermophile	no	98.833	yes
[Ref.: #69480]	glucose-util	yes	93.271	no
[Ref.: #69480]	glucose-ferment	yes	91.957	no
[Ref.: #69480]	motile	yes	90.801	no
[Ref.: #69480]	flagellated	yes	67.514	no
[Ref.: #69480]	gram-positive	no	98.118	no
[Ref.: #69480]	anaerobic	no	78.342	yes
[Ref.: #69480]	aerobic	no	60.215	no
[Ref.: #69480]	halophile	no	86.985	no
[Ref.: #69480]	spore-forming	no	93.698	no
[Ref.: #69480]	thermophile	no	98.833	yes
[Ref.: #69480]	glucose-util	yes	93.271	no
[Ref.: #69480]	glucose-ferment	yes	91.957	no

Availability in culture collections External links

[Ref.: #22607]

Culture collection no.

DSM 27202, CCTCC AB 2013118, CCUG 64215, MCCC 1K00238

[Ref.: #89817]

SI-ID 397420

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics characterization of a highly virulent Edwardsiella strain ET080813(T) encoding two distinct T3SS and three T6SS gene clusters: Propose a novel species as Edwardsiella anguillarum sp. nov.	Shao S, Lai Q, Liu Q, Wu H, Xiao J, Shao Z, Wang Q, Zhang Y	Syst Appl Microbiol	10.1016/j.syapm.2014.10.008	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22607

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27202

#63102 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 64215

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89817

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397420.1 )

* These data were automatically processed and therefore are not curated

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Edwardsiella anguillarum strain CCUG 64215

Edwardsiella anguillarum ET080813 ET080813

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