Strain identifier

BacDive ID: 131380

Type strain: Yes

Species: Edwardsiella anguillarum

Strain Designation: ET080813

Strain history: <- Q. Wang, East China Univ. of Science and Technol., Shanghai, P.R. China; CCTCC AB 2013118

NCBI tax ID(s): 1821960 (species)

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General

@ref: 22607

BacDive-ID: 131380

DSM-Number: 27202

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, human pathogen

description: Edwardsiella anguillarum ET080813 is an aerobe, Gram-negative human pathogen that was isolated from diseased Japanese eel.

NCBI tax id

  • NCBI tax id: 1821960
  • Matching level: species

strain history

  • @ref: 22607
  • history: <- Q. Wang, East China Univ. of Science and Technol., Shanghai, P.R. China; CCTCC AB 2013118

doi: 10.13145/bacdive131380.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Hafniaceae
  • genus: Edwardsiella
  • species: Edwardsiella anguillarum
  • full scientific name: Edwardsiella anguillarum Shao et al. 2015

@ref: 22607

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Hafniaceae

genus: Edwardsiella

species: Edwardsiella anguillarum

full scientific name: Edwardsiella anguillarum Shao et al. 2015

strain designation: ET080813

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.5

colony morphology

  • @ref: 63102
  • incubation period: 1 day

multimedia

  • @ref: 22607
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27202.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22607TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
22607COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperature
63102positivegrowth30
22607positivegrowth28
22607positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 63102
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
22607--+++---+--++------+/-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
22607diseased Japanese eelFujian ProvinceChinaCHNAsia
63102Japanese eel,diseasedFuijan provinceChinaCHNAsia2008-05-17

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes

taxonmaps

  • @ref: 69479
  • File name: preview.99_47.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_38;97_40;98_44;99_47&stattab=map
  • Last taxonomy: Edwardsiella
  • 16S sequence: GQ180183
  • Sequence Identity:
  • Total samples: 22716
  • soil counts: 509
  • aquatic counts: 2305
  • animal counts: 19360
  • plant counts: 542

Safety information

risk assessment

  • @ref: 22607
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22607
  • description: Edwardsiella anguillarum ET080813 16S ribosomal RNA gene, partial sequence
  • accession: GQ180183
  • length: 1508
  • database: nuccore
  • NCBI tax ID: 667120

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Edwardsiella anguillarum ET080813GCA_000264765contigncbi667120
66792Edwardsiella anguillarum CCUG 64215GCA_008801815contigncbi1821960
66792Edwardsiella anguillarum ET080813667120.10plasmidpatric667120
66792Edwardsiella anguillarum ET080813667120.9plasmidpatric667120
66792Edwardsiella anguillarum strain CCUG 642151821960.6wgspatric1821960

GC content

  • @ref: 22607
  • GC-content: 58.72
  • method: sequence analysis

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno99.5no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no90.616no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no73.833yes
69480spore-formingspore-formingAbility to form endo- or exosporesno87.704no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno97.984yes
69480flagellatedmotile2+Ability to perform flagellated movementyes71.715no

External links

@ref: 22607

culture collection no.: DSM 27202, CCTCC AB 2013118, CCUG 64215, MCCC 1K00238

straininfo link

  • @ref: 89817
  • straininfo: 397420

literature

  • topic: Phylogeny
  • Pubmed-ID: 25466920
  • title: Phylogenomics characterization of a highly virulent Edwardsiella strain ET080813(T) encoding two distinct T3SS and three T6SS gene clusters: Propose a novel species as Edwardsiella anguillarum sp. nov.
  • authors: Shao S, Lai Q, Liu Q, Wu H, Xiao J, Shao Z, Wang Q, Zhang Y
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2014.10.008
  • year: 2014
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Edwardsiella/*genetics, Genes, Essential, Genome, Bacterial, Multigene Family, Multilocus Sequence Typing, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Type III Secretion Systems/*genetics, Type VI Secretion Systems/*genetics
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22607Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27202Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27202)
63102Curators of the CCUGhttps://www.ccug.se/strain?id=64215Culture Collection University of Gothenburg (CCUG) (CCUG 64215)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89817Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397420.1