Name: Chromobacterium amazonense DSM 26508
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131375

Type strain:

Species: Chromobacterium amazonense

Culture col. no.: DSM 26508, CBMAI 310

Strain history: <- F. Fantinatti-Garboggini, CPQBA/Unicamp, Div. de Recursos Microbianos, Campinas, Brazil; CBMAI 310

NCBI tax ID(s): 1382803 (species)

SI-ID 210562

CBMAI 310, DSM 26508

Special Collections

DSMZ

Other strains from Chromobacterium amazonense

Section

Chromobacterium amazonense DSM 26508 is a mesophilic, Gram-negative bacterium that was isolated from river water.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Neisseriales*
	Family	*Chromobacteriaceae*
	Genus	*Chromobacterium*
	Species	**Chromobacterium amazonense**
	Full Scientific Name (LPSN)	Chromobacterium amazonense Menezes et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.994

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22602]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22602]

Culture medium growth

[Ref.: #22602]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22602]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22602]			growth	28 °C
[Ref.: #22602]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22602]	27456	-	-	+	+	-	-	+	-	+	-	-	-	+	-	+	-	-	+	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22602]	Sample type/isolated from	river water
[Ref.: #22602]	Geographic location (country and/or sea, region)	Amazona, Rio Preto da Eva, Rio Negro (2°42'09'' S 59°42'05''W)
[Ref.: #22602]	Country	Brazil
[Ref.: #22602]	Country ISO 3 Code	BRA
[Ref.: #22602]	Continent	Middle and South America
[Ref.: #22602]	Geographic location	-2.7025°/-59.7014°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF137653 (>99% sequence identity) for Chromobacterium from Microbeatlas

Aquatic Samples	3701
Soil Samples	1022
Animal Samples	4631
Plant Samples	999
Total Samples	10353

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22602]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22602]	Chromobacterium amazonense 16S ribosomal RNA gene, partial sequence	KF137653	1498	GenBank ENA	1382803 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chromobacterium amazonense DSM 26508	GCA_001855565	contig	GenBank ENA	1382803 tax ID	*
[Ref.: #66792]	Chromobacterium amazonense strain DSM 26508	1382803.3	wgs	PATRIC	1382803 tax ID	*
[Ref.: #66792]	Chromobacterium amazonense DSM 26508	2896398972	draft	JGI IMG/M	1382803 tax ID	*

[Ref.: #22602]

GC-content

68.7 mol%

fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chromobacterium amazonense strain DSM 26508 PATRIC: 1382803.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chromobacterium amazonense strain DSM 26508 PATRIC: 1382803.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.994	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.348	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.215	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	54.616	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.342	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.355	no

Availability in culture collections External links

[Ref.: #22602]

Culture collection no.

DSM 26508, CBMAI 310

[Ref.: #89812]

SI-ID 210562

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chromobacterium phragmitis sp. nov., isolated from estuarine marshes.	Blackburn MB, Farrar RR Jr, Sparks ME, Kuhar D, Mowery JD, Mitchell A, Gundersen-Rindal DE	Int J Syst Evol Microbiol	10.1099/ijsem.0.003508	2019	*
Phylogeny	Chromobacterium amazonense sp. nov. isolated from water samples from the Rio Negro, Amazon, Brazil.	Menezes CB, Tonin MF, Correa DB, Parma M, de Melo IS, Zucchi TD, Destefano SA, Fantinatti-Garboggini F	Antonie Van Leeuwenhoek	10.1007/s10482-015-0397-3	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22602

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26508

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89812

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID210562.1 )

* These data were automatically processed and therefore are not curated

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Chromobacterium amazonense strain DSM 26508

Chromobacterium amazonense strain DSM 26508

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