Name: Chryseobacterium profundimaris DY46
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131376

Type strain:

Species: Chryseobacterium profundimaris

Strain Designation: DY46

Culture col. no.: DSM 28214, CGMCC 1.12663, JCM 19801

Strain history: Y.-Y. Huo DY46.

NCBI tax ID(s): 1387275 (species)

SI-ID 397928

DSM 28214

Other strains from Chryseobacterium profundimaris

C. profundimaris 303-78, CIP 111042

Section

Chryseobacterium profundimaris DY46 is a mesophilic bacterium that was isolated from deep-sea sediment.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium profundimaris**
	Full Scientific Name (LPSN)	Chryseobacterium profundimaris Xu et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22603]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22603]

Culture medium growth

[Ref.: #22603]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22603]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22603]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #22603]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22603]	Sample type/isolated from	deep-sea sediment
[Ref.: #22603]	Geographic location (country and/or sea, region)	mid-ridge (33.11° W 5.96° N, at a depth of 2577 m)
[Ref.: #22603]	Geographic location	5.9600°/-33.1100°

[Ref.: #67770]	Sample type/isolated from	Deep-sea sediment sample collected from the Atlantic Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF434119 (>99% sequence identity) for Chryseobacterium from Microbeatlas

Aquatic Samples	63
Soil Samples	32
Animal Samples	276
Plant Samples	49
Total Samples	420

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22603]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22603]	Chryseobacterium profundimaris strain DY46 16S ribosomal RNA gene, partial sequence	KF434119	1439	ENA	1387275 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium profundimaris DSM 28214	2724679817	draft	JGI IMG/M	1387275 tax ID	*

[Ref.: #22603]

GC-content

40.7 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #22603]

Culture collection no.

DSM 28214, CGMCC 1.12663, JCM 19801

[Ref.: #89813]

SI-ID 397928

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium nepalense sp. nov., isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001680	2017	*
Phylogeny	Chryseobacterium profundimaris sp. nov., a new member of the family Flavobacteriaceae isolated from deep-sea sediment.	Xu L, Huo YY, Li ZY, Wang CS, Oren A, Xu XW	Antonie Van Leeuwenhoek	10.1007/s10482-015-0390-x	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22603

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28214

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89813

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397928.1 )

* These data were automatically processed and therefore are not curated

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