Chryseobacterium profundimaris (DSM 28214, CGMCC 1.12663, JCM 19801)

Name: Chryseobacterium profundimaris (DSM 28214, CGMCC 1.12663, JCM 19801)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131376

Type strain

Strain Designation DY46

Culture col. no. DSM 28214 CGMCC 1.12663 JCM 19801 DY46

NCBI tax ID(s) 1387275

Special Collections DSMZ JCM

History <- L. Xu, Second Inst. Oceanography, State Oceanic Admin., Hangzhou, China; DY46 <- Y.-H. Wu Y.-Y. Huo DY46.

Links

Chryseobacterium profundimaris DY46 is a mesophilic prokaryote that was isolated from deep-sea sediment.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397928

JCM 19801,DSM 28214

@ref 20215

Last LPSN update 2026-02-09 11:31:27

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium profundimaris

Full scientific name Chryseobacterium profundimaris Xu et al. 2015

BacDive ID	Other strains from **Chryseobacterium profundimaris** (1)	Type strain
139442	C. profundimaris 303-78, CIP 111042

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22603	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22603	positive	growth	28	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Latitude	Longitude
22603	deep-sea sediment	mid-ridge (33.11° W 5.96° N, at a depth of 2577 m)	5.96	-33.11 5.96/-33.11
67770	Deep-sea sediment sample collected from the Atlantic Ocean

Taxonmaps

69479

Global distribution of 16S sequence KF434119 (>99% sequence identity) for Chryseobacterium from Microbeatlas

Aquatic Samples	63
Soil Samples	32
Animal Samples	276
Plant Samples	49
Total Samples	420

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22603	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	IMG-taxon 2724679817 annotated assembly for Chryseobacterium profundimaris DSM 28214	scaffold	GCA_900182825	1387275.4	2724679817	1387275	71.53

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22603	Chryseobacterium profundimaris strain DY46 16S ribosomal RNA gene, partial sequence	KF434119	1439		1387275

GC content

@ref	GC-content (mol%)	Method
22603	40.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium nepalense sp. nov., isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001680	2017
Phylogeny	Chryseobacterium profundimaris sp. nov., a new member of the family Flavobacteriaceae isolated from deep-sea sediment.	Xu L, Huo YY, Li ZY, Wang CS, Oren A, Xu XW	Antonie Van Leeuwenhoek	10.1007/s10482-015-0390-x	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22603	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28214
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium profundimaris (DSM 28214, CGMCC 1.12663, JCM 19801)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900182825

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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