Name: Vreelandella glaciei DD 39
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131373

Type strain:

Species: Vreelandella glaciei

Strain Designation: DD 39

Variant: Isotype of BacDive ID 138529

Culture col. no.: DSM 15938, JCM 11692, MTCC 4321, CGMCC 1.7263, CIP 107768

Strain history: CIP <- 2002, S. Shivaji, CCMB, Hyderabad, India: strain DD 39

NCBI tax ID(s): 186761 (species)

Special Collections

Section

Vreelandella glaciei DD 39 is a Gram-negative, rod-shaped bacterium that was isolated from solid layer of fast ice.

Gram-negative
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Oceanospirillales*
	Family	*Halomonadaceae*
	Genus	"Vreelandella"
	Species	"Vreelandella glaciei"
	Full Scientific Name (LPSN)	Vreelandella glaciei (Reddy et al. 2003) De la Haba et al. 2023

Synonym

"Halomonas glaciei"

Information on morphological and physiological properties Morphology

[Ref.: #39940]	Gram stain	negative

[Ref.: #39940]	Cell shape	rod-shaped

[Ref.: #39940]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22600]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #22600]

Culture medium growth

[Ref.: #22600]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22600]

Culture medium composition

expand / minimize

[Ref.: #39940]

Culture medium

CIP Medium 13

[Ref.: #39940]

Culture medium growth

[Ref.: #39940]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #22600]		growth	22 °C
[Ref.: #39940]		growth	5-37 °C
[Ref.: #39940]	no	growth	41 °C
[Ref.: #39940]	no	growth	45 °C
[Ref.: #67770]		growth	20 °C

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #39940]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: Q-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #39940]	citrate ChEBI	-	carbon source
[Ref.: #39940]	esculin ChEBI	-	hydrolysis
[Ref.: #39940]	hippurate ChEBI	-	hydrolysis
[Ref.: #39940]	malonate ChEBI	-	assimilation
[Ref.: #39940]	nitrate ChEBI	+	reduction
[Ref.: #39940]	nitrite ChEBI	-	reduction
[Ref.: #39940]	tributyrin ChEBI	+	hydrolysis

	Metabolite production	Metabolite	Production
[Ref.: #39940]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #39940]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #39940]	amylase	-
[Ref.: #39940]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #39940]	caseinase	-	3.4.21.50
[Ref.: #39940]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #39940]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #39940]	gelatinase	+/-
[Ref.: #39940]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #39940]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #39940]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #39940]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #39940]	oxidase	+
[Ref.: #39940]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #39940]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #39940]	tryptophan deaminase	-
[Ref.: #39940]	tween esterase	+
[Ref.: #39940]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #39940]	2424	not determinedn.d.	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	+	-	-	-	-	+	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	+	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	+	+	+	-	-	-	-	-	-	+	+	+	+	-	+	-	-	+	-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #39940]	10637	-	+	+	-	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22600]	Sample type/isolated from	solid layer of fast ice
[Ref.: #22600]	Geographic location (country and/or sea, region)	Adélie Land, middle of Pointe-Geologie Archipelago
[Ref.: #22600]	Country	Antarctica
[Ref.: #22600]	Country ISO 3 Code	ATA
[Ref.: #22600]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Fast-ice from Adelie Land
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica

[Ref.: #39940]	Sample type/isolated from	Environment, Fast ice
[Ref.: #39940]	Geographic location (country and/or sea, region)	Adelia land
[Ref.: #39940]	Country	Antarctica
[Ref.: #39940]	Country ISO 3 Code	ATA
[Ref.: #39940]	Continent	Antarctica
[Ref.: #39940]	Isolation date	1998
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Ice

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ431369 (>99% sequence identity) for Halomonas from Microbeatlas

Aquatic Samples	3268
Soil Samples	321
Animal Samples	696
Plant Samples	83
Total Samples	4368

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #39940]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22600]	Halomonas frigidi 16S rRNA gene, strain DD 39	AJ431369	1488	GenBank ENA	186761 tax ID

[Ref.: #22600]	GC-content	57 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	57 mol%

Availability in culture collections External links

[Ref.: #22600]

Culture collection no.

DSM 15938, JCM 11692, MTCC 4321, CGMCC 1.7263, CIP 107768

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomonas glaciei sp. nov. isolated from fast ice of Adelie Land, Antarctica.	Reddy GS, Raghavan PU, Sarita NB, Prakash JS, Nagesh N, Delille D, Shivaji S	Extremophiles	10.1007/s00792-002-0295-2	2002	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22600

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15938

#39940 Collection of Institut Pasteur ; Curators of the CIP; CIP 107768
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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