Streptomyces rhizophilus (DSM 102003, KACC 16580, NBRC 108885)

Name: Streptomyces rhizophilus (DSM 102003, KACC 16580, NBRC 108885)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131282

Type strain

Strain Designation JR-41

Culture col. no. DSM 102003 KACC 16580 NBRC 108885 JR-41

NCBI tax ID(s) 1367506

Special Collections DSMZ

Links

Streptomyces rhizophilus JR-41 is a mesophilic prokaryote that was isolated from bamboo Sasa borealis rhizosphere soil.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 396927

NBRC 108885,DSM 102003

@ref 20215

Last LPSN update 2025-12-16 10:01:12

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces rhizophilus

Full scientific name Streptomyces rhizophilus Lee and Whang 2014

Morphology

Multimedia

@ref:	22509
multimedia content:	DSM_102003.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_102003.jpg
caption:	Medium 84 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22509	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
22509	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22509	positive	growth	28	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
22509	bamboo Sasa borealis rhizosphere soil	Sasa borealis	Damyang	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22509	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22509	Streptomyces rhizophilus strain JR-41 16S ribosomal RNA gene, partial sequence	HQ267989	1457		1367506

GC content

22509

GC-content (mol%)71

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces rhizophilus Causes Potato Common Scab Disease.	Wei Q, Li J, Yang S, Wang W, Min F, Guo M, Zhang S, Dong X, Hu L, Li Z, Wang X	Plant Dis	10.1094/PDIS-09-20-1902-RE	2022
Phylogeny	Streptomyces fuscichromogenes sp. nov., an actinomycete from soil.	Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001573	2017
Phylogeny	Streptomyces humi sp. nov., an actinobacterium isolated from soil of a mangrove forest.	Zainal N, Ser HL, Yin WF, Tee KK, Lee LH, Chan KG	Antonie Van Leeuwenhoek	10.1007/s10482-016-0653-1	2016
Phylogeny	Presence of antioxidative agent, Pyrrolo[1,2-a]pyrazine-1,4-dione, hexahydro- in newly isolated Streptomyces mangrovisoli sp. nov.	Ser HL, Palanisamy UD, Yin WF, Abd Malek SN, Chan KG, Goh BH, Lee LH	Front Microbiol	10.3389/fmicb.2015.00854	2015
Phylogeny	Streptomyces sasae sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.000454	2015
Phylogeny	Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.055210-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22509	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102003
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces rhizophilus (DSM 102003, KACC 16580, NBRC 108885)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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