Name: Streptomyces rhizophilus JR-41
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131282

Type strain:

Species: Streptomyces rhizophilus

Strain Designation: JR-41

Culture col. no.: DSM 102003, KACC 16580, NBRC 108885

Strain history: <- KACC; KACC 16580 <- K.S. Whang (Mokwon Univ.); JR-19

NCBI tax ID(s): 1367506 (species)

SI-ID 396927

DSM 102003

Special Collections

DSMZ

Section

Streptomyces rhizophilus JR-41 is a bacterium that was isolated from bamboo Sasa borealis rhizosphere soil.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces rhizophilus**
	Full Scientific Name (LPSN)	Streptomyces rhizophilus Lee and Whang 2014

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #22509]

Caption:

Medium 84 28°C

[Ref.: #22509]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22509]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #22509]

Culture medium growth

[Ref.: #22509]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #22509]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #22509]

Culture medium growth

[Ref.: #22509]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22509]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22509]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22509]	Sample type/isolated from	bamboo Sasa borealis rhizosphere soil
[Ref.: #22509]	Host species	Sasa borealis
[Ref.: #22509]	Geographic location (country and/or sea, region)	Damyang
[Ref.: #22509]	Country	Republic of Korea
[Ref.: #22509]	Country ISO 3 Code	KOR
[Ref.: #22509]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22509]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22509]	Streptomyces rhizophilus strain JR-41 16S ribosomal RNA gene, partial sequence	HQ267989	1457	GenBank ENA	1367506 tax ID

[Ref.: #22509]

GC-content

71 mol%

Availability in culture collections External links

[Ref.: #22509]

Culture collection no.

DSM 102003, KACC 16580, NBRC 108885

[Ref.: #89726]

SI-ID 396927

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces rhizophilus Causes Potato Common Scab Disease.	Wei Q, Li J, Yang S, Wang W, Min F, Guo M, Zhang S, Dong X, Hu L, Li Z, Wang X	Plant Dis	10.1094/PDIS-09-20-1902-RE	2022	*
Phylogeny	Streptomyces fuscichromogenes sp. nov., an actinomycete from soil.	Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001573	2017	*
Phylogeny	Streptomyces humi sp. nov., an actinobacterium isolated from soil of a mangrove forest.	Zainal N, Ser HL, Yin WF, Tee KK, Lee LH, Chan KG	Antonie Van Leeuwenhoek	10.1007/s10482-016-0653-1	2016	*
Phylogeny	Presence of antioxidative agent, Pyrrolo[1,2-a]pyrazine-1,4-dione, hexahydro- in newly isolated Streptomyces mangrovisoli sp. nov.	Ser HL, Palanisamy UD, Yin WF, Abd Malek SN, Chan KG, Goh BH, Lee LH	Front Microbiol	10.3389/fmicb.2015.00854	2015	*
Phylogeny	Streptomyces sasae sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.000454	2015	*
Phylogeny	Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.055210-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22509

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102003

#89726

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396927.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces rhizophilus in external resources:
SILVA
BRENDA
PANGAEA
GBIF