Strain identifier

BacDive ID: 131282

Type strain: Yes

Species: Streptomyces rhizophilus

Strain Designation: JR-41

Strain history: <- KACC; KACC 16580 <- K.S. Whang (Mokwon Univ.); JR-19

NCBI tax ID(s): 1367506 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 22509

BacDive-ID: 131282

DSM-Number: 102003

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces rhizophilus JR-41 is a mesophilic bacterium that was isolated from bamboo Sasa borealis rhizosphere soil.

NCBI tax id

  • NCBI tax id: 1367506
  • Matching level: species

strain history

  • @ref: 22509
  • history: <- KACC; KACC 16580 <- K.S. Whang (Mokwon Univ.); JR-19

doi: 10.13145/bacdive131282.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces rhizophilus
  • full scientific name: Streptomyces rhizophilus Lee and Whang 2014

@ref: 22509

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces rhizophilus

full scientific name: Streptomyces rhizophilus Lee and Whang 2014

strain designation: JR-41

type strain: yes

Morphology

multimedia

  • @ref: 22509
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102003.jpg
  • caption: Medium 84 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22509ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
22509GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 22509
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 22509
  • sample type: bamboo Sasa borealis rhizosphere soil
  • host species: Sasa borealis
  • geographic location: Damyang
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 22509
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22509
  • description: Streptomyces rhizophilus strain JR-41 16S ribosomal RNA gene, partial sequence
  • accession: HQ267989
  • length: 1457
  • database: ena
  • NCBI tax ID: 1367506

GC content

  • @ref: 22509
  • GC-content: 71

External links

@ref: 22509

culture collection no.: DSM 102003, KACC 16580, NBRC 108885

straininfo link

  • @ref: 89726
  • straininfo: 396927

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24478213Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijs.0.055210-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26296574Streptomyces sasae sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil.Lee HJ, Whang KSInt J Syst Evol Microbiol10.1099/ijsem.0.0004542015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purificationGenetics
Phylogeny26347733Presence of antioxidative agent, Pyrrolo[1,2-a]pyrazine-1,4-dione, hexahydro- in newly isolated Streptomyces mangrovisoli sp. nov.Ser HL, Palanisamy UD, Yin WF, Abd Malek SN, Chan KG, Goh BH, Lee LHFront Microbiol10.3389/fmicb.2015.008542015
Phylogeny26786500Streptomyces humi sp. nov., an actinobacterium isolated from soil of a mangrove forest.Zainal N, Ser HL, Yin WF, Tee KK, Lee LH, Chan KGAntonie Van Leeuwenhoek10.1007/s10482-016-0653-12016Bacterial Typing Techniques, Base Composition, *Forests, Genome, Bacterial, Genomics, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purificationGenetics
Phylogeny27902221Streptomyces fuscichromogenes sp. nov., an actinomycete from soil.Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang JInt J Syst Evol Microbiol10.1099/ijsem.0.0015732017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rainforest, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny34615364Streptomyces rhizophilus Causes Potato Common Scab Disease.Wei Q, Li J, Yang S, Wang W, Min F, Guo M, Zhang S, Dong X, Hu L, Li Z, Wang XPlant Dis10.1094/PDIS-09-20-1902-RE2022Phylogeny, Plant Diseases, RNA, Ribosomal, 16S/genetics, *Solanum tuberosum, *Streptomyces/genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22509Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102003Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102003)
89726Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396927.1