Strain identifier
BacDive ID: 131282
Type strain:
Species: Streptomyces rhizophilus
Strain Designation: JR-41
Strain history: <- KACC; KACC 16580 <- K.S. Whang (Mokwon Univ.); JR-19
NCBI tax ID(s): 1367506 (species)
General
@ref: 22509
BacDive-ID: 131282
DSM-Number: 102003
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces rhizophilus JR-41 is a mesophilic bacterium that was isolated from bamboo Sasa borealis rhizosphere soil.
NCBI tax id
- NCBI tax id: 1367506
- Matching level: species
strain history
- @ref: 22509
- history: <- KACC; KACC 16580 <- K.S. Whang (Mokwon Univ.); JR-19
doi: 10.13145/bacdive131282.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces rhizophilus
- full scientific name: Streptomyces rhizophilus Lee and Whang 2014
@ref: 22509
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces rhizophilus
full scientific name: Streptomyces rhizophilus Lee and Whang 2014
strain designation: JR-41
type strain: yes
Morphology
multimedia
- @ref: 22509
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102003.jpg
- caption: Medium 84 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
22509 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
22509 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 22509
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22509
- sample type: bamboo Sasa borealis rhizosphere soil
- host species: Sasa borealis
- geographic location: Damyang
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Rhizosphere |
Safety information
risk assessment
- @ref: 22509
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22509
- description: Streptomyces rhizophilus strain JR-41 16S ribosomal RNA gene, partial sequence
- accession: HQ267989
- length: 1457
- database: ena
- NCBI tax ID: 1367506
GC content
- @ref: 22509
- GC-content: 71
External links
@ref: 22509
culture collection no.: DSM 102003, KACC 16580, NBRC 108885
straininfo link
- @ref: 89726
- straininfo: 396927
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24478213 | Streptomyces graminisoli sp. nov. and Streptomyces rhizophilus sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil. | Lee HJ, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.055210-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 26296574 | Streptomyces sasae sp. nov., isolated from bamboo (Sasa borealis) rhizosphere soil. | Lee HJ, Whang KS | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000454 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sasa/*microbiology, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification | Genetics |
Phylogeny | 26347733 | Presence of antioxidative agent, Pyrrolo[1,2-a]pyrazine-1,4-dione, hexahydro- in newly isolated Streptomyces mangrovisoli sp. nov. | Ser HL, Palanisamy UD, Yin WF, Abd Malek SN, Chan KG, Goh BH, Lee LH | Front Microbiol | 10.3389/fmicb.2015.00854 | 2015 | ||
Phylogeny | 26786500 | Streptomyces humi sp. nov., an actinobacterium isolated from soil of a mangrove forest. | Zainal N, Ser HL, Yin WF, Tee KK, Lee LH, Chan KG | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0653-1 | 2016 | Bacterial Typing Techniques, Base Composition, *Forests, Genome, Bacterial, Genomics, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification | Genetics |
Phylogeny | 27902221 | Streptomyces fuscichromogenes sp. nov., an actinomycete from soil. | Zhang H, Zheng J, Zhuang J, Xin Y, Zheng X, Zhang J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001573 | 2017 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rainforest, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Tropical Climate, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 34615364 | Streptomyces rhizophilus Causes Potato Common Scab Disease. | Wei Q, Li J, Yang S, Wang W, Min F, Guo M, Zhang S, Dong X, Hu L, Li Z, Wang X | Plant Dis | 10.1094/PDIS-09-20-1902-RE | 2022 | Phylogeny, Plant Diseases, RNA, Ribosomal, 16S/genetics, *Solanum tuberosum, *Streptomyces/genetics |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22509 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102003 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102003) | |
89726 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396927.1 |