Name: Sphaerotilus natans subsp. sulfidivorans D-501
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131182

Type strain:

Species: Sphaerotilus natans subsp. sulfidivorans

Strain Designation: D-501

Culture col. no.: DSM 22545, VKM B-2573

Strain history: <- M. Grabovich, Voronezh State Univ., Russia; D-501 <- E. Gridneva, M. Grabovich and G. Dubinina

NCBI tax ID(s): 639200 (species)

SI-ID 377104

DSM 22545, VKM B-2573

Special Collections

DSMZ

Section

Sphaerotilus natans subsp. sulfidivorans D-501 is a bacterium that was isolated from sulfur mat of a sulfide thermal spring .

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Sphaerotilus*
	Species	**Sphaerotilus natans subsp. sulfidivorans**
	Full Scientific Name (LPSN)	Sphaerotilus natans subsp. sulfidivorans Gridneva et al. 2011

Synonym

Sphaerotilus sulfidivorans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16391]

Culture medium

SPHAEROTILUS MEDIUM (DSMZ Medium 51)

[Ref.: #16391]

Culture medium growth

[Ref.: #16391]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16391]

Culture medium composition

expand / minimize

[Ref.: #16391]

Culture medium

MODIFIED SPHAEROTILUS NATANS SSP. SULFIDIVORANS MEDIUM (DSMZ Medium 1664a)

[Ref.: #16391]

Culture medium growth

[Ref.: #16391]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16391]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16391]			growth	25 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16391]	Sample type/isolated from	sulfur mat of a sulfide thermal spring (34–37 °C)
[Ref.: #16391]	Geographic location (country and/or sea, region)	Northern Caucasus, Petushok spring
[Ref.: #16391]	Country	Russia
[Ref.: #16391]	Country ISO 3 Code	RUS
[Ref.: #16391]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Sulfuric	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ871054 (>99% sequence identity) for Sphaerotilus natans subclade from Microbeatlas

Aquatic Samples	16039
Soil Samples	1888
Animal Samples	5244
Plant Samples	1544
Total Samples	24715

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16391]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16391]	Sphaerotilus natans subsp. sulfidivorans strain D-501 16S ribosomal RNA gene, partial sequence	FJ871054	1426	GenBank ENA	639200 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphaerotilus sulfidivorans D-501	GCA_013426975	contig	GenBank ENA	639200 tax ID	*
[Ref.: #66792]	Sphaerotilus natans sulfidivorans DSM 22545	2928243794	draft	JGI IMG/M	639200 tax ID	*

[Ref.: #16391]

GC-content

69.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #16391]

Culture collection no.

DSM 22545, VKM B-2573

[Ref.: #89627]

SI-ID 377104

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Sphaerotilus natans subsp. sulfidivorans Gridneva et al. 2011 as Sphaerotilus sulfidivorans sp. nov. and comparative genome analysis of the genus Sphaerotilus.	Grabovich MY, Smolyakov DD, Beletsky AV, Mardanov AV, Gureeva MV, Markov ND, Rudenko TS, Ravin NV	Arch Microbiol	10.1007/s00203-020-02158-6	2021	*
Phylogeny	Taxonomic investigation of representatives of the genus Sphaerotilus: descriptions of Sphaerotilus montanus sp. nov., Sphaerotilus hippei sp. nov., Sphaerotilus natans subsp. natans subsp. nov. and Sphaerotilus natans subsp. sulfidivorans subsp. nov., and an emended description of the genus Sphaerotilus.	Gridneva E, Chernousova E, Dubinina G, Akimov V, Kuever J, Detkova E, Grabovich M	Int J Syst Evol Microbiol	10.1099/ijs.0.023887-0	2010	*

References

#16391

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22545

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89627

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377104.1 )

* These data were automatically processed and therefore are not curated

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