Name: Hydrotalea flava DSM 28441
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131181

Type strain:

Species: Hydrotalea flava

Culture col. no.: DSM 28441, CCM 7760, CCUG 51397

Strain history: <- CCUG

NCBI tax ID(s): 714549 (species)

SI-ID 303539

CCUG 51397, CCM 7760, DSM 28441

Other strains from Hydrotalea flava

H. flava CCUG 51278
H. flava CCUG 51396
H. flava CCUG 53736
H. flava CCUG 53920
H. flava CCUG 54435

Section

Hydrotalea flava DSM 28441 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from industry, distilled water.

Gram-negative
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Hydrotalea*
	Species	**Hydrotalea flava**
	Full Scientific Name (LPSN)	Hydrotalea flava Kämpfer et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29863]	Gram stain	negative

[Ref.: #29863]	Cell length	1.75 µm

[Ref.: #29863]	Cell width	0.5 µm

[Ref.: #29863]	Cell shape	rod-shaped

[Ref.: #29863]	Motility	no

[Ref.: #29863]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22473]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22473]

Culture medium growth

[Ref.: #22473]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22473]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22473]	growth	28 °C
[Ref.: #29863]	growth	25-30 °C
[Ref.: #59180]	growth	37 °C

[Ref.: #22473]	Temperature range	mesophilic
[Ref.: #29863]	Temperature range	mesophilic
[Ref.: #59180]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29863]	Oxygen tolerance	facultative anaerobe
[Ref.: #59180]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29863]		NaCl		growth	<4.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29863]	cellobiose ChEBI	+	carbon source
[Ref.: #29863]	fructose ChEBI	+	carbon source
[Ref.: #29863]	galactose ChEBI	+	carbon source
[Ref.: #29863]	melibiose ChEBI	+	carbon source
[Ref.: #29863]	rhamnose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29863]		catalase	+	1.11.1.6
[Ref.: #29863]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22473]	Sample type/isolated from	industry, distilled water
[Ref.: #22473]	Country	Sweden
[Ref.: #22473]	Country ISO 3 Code	SWE
[Ref.: #22473]	Continent	Europe

[Ref.: #59180]	Sample type/isolated from	Industry,distilled water
[Ref.: #59180]	Sampling date	2005-07-01
[Ref.: #59180]	Country	Sweden
[Ref.: #59180]	Country ISO 3 Code	SWE
[Ref.: #59180]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	-
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN665659 (>99% sequence identity) for Hydrotalea from Microbeatlas

Aquatic Samples	3236
Soil Samples	1385
Animal Samples	6417
Plant Samples	664
Total Samples	11702

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22473]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22473]	Hydrotalea flava partial 16S rRNA gene, strain CCUG 51397	FN665659	1409	ENA	714549 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hydrotalea flava CCUG 51397	GCA_001623405	contig	GenBank	714549 tax ID	*
[Ref.: #66792]	Hydrotalea flava strain CCUG 51397	714549.28	wgs	PATRIC	714549 tax ID	*
[Ref.: #66792]	Hydrotalea flava CCUG 51397	2751185699	draft	JGI IMG/M	714549 tax ID	*

[Ref.: #29863]

GC-content

42 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hydrotalea flava strain CCUG 51397 PATRIC: 714549.28
[Ref.: #69480]	gram-positive	no	96.742	yes
[Ref.: #69480]	anaerobic	no	98.743	yes
[Ref.: #69480]	halophile	no	97.053	no
[Ref.: #69480]	spore-forming	no	93.175	no
[Ref.: #69480]	glucose-util	yes	89.707	no
[Ref.: #69480]	thermophile	no	68.471	yes
[Ref.: #69480]	aerobic	yes	87.311	no
[Ref.: #69480]	motile	no	95.957	yes
[Ref.: #69480]	flagellated	no	98.048	yes
[Ref.: #69480]	glucose-ferment	no	88.994	no

Availability in culture collections External links

[Ref.: #22473]

Culture collection no.

DSM 28441, CCM 7760, CCUG 51397

[Ref.: #89626]

SI-ID 303539

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Hydrotalea flava Strain CCUG 51397T.	Leite LR, Medeiros JD, Fernandes GR, Araujo F, Pylro VS, Salim AC, Volpini A, Oliveira G, Cuadros-Orellana S	Genome Announc	10.1128/genomeA.00527-16	2016	*
Phylogeny	Proposal of Vibrionimonas magnilacihabitans gen. nov., sp. nov., a curved Gram-stain-negative bacterium isolated from lake water.	Albert RA, Zitomer D, Dollhopf M, Schauer-Gimenez AE, Struble C, King M, Son S, Langer S, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.056663-0	2013	*
Phylogeny	Hydrotalea flava gen. nov., sp. nov., a new member of the phylum Bacteroidetes and allocation of the genera Chitinophaga, Sediminibacterium, Lacibacter, Flavihumibacter, Flavisolibacter, Niabella, Niastella, Segetibacter, Parasegetibacter, Terrimonas, Ferruginibacter, Filimonas and Hydrotalea to the family Chitinophagaceae fam. nov.	Kampfer P, Lodders N, Falsen E	Int J Syst Evol Microbiol	10.1099/ijs.0.023002-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22473

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28441

#29863

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26237 (see below)

#59180 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51397

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89626

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID303539.1 )

#26237

IJSEM 518 2011 ( DOI 10.1099/ijs.0.023002-0 , PubMed 20382796 )

* These data were automatically processed and therefore are not curated

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Hydrotalea flava strain CCUG 51397

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