Name: Lysobacter panacisoli CJ29
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131176

Type strain:

Species: Lysobacter panacisoli

Strain Designation: CJ29

Culture col. no.: DSM 101805, JCM 19212, KACC 17502

Strain history: C.-J. Cha CJ29.

NCBI tax ID(s): 1255263 (species)

SI-ID 403185

DSM 101805

Special Collections

DSMZ
JCM

Section

Lysobacter panacisoli CJ29 is a Gram-negative bacterium that was isolated from soil from ginseng field.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter panacisoli**
	Full Scientific Name (LPSN)	Lysobacter panacisoli Choi et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.235

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22468]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22468]

Culture medium growth

[Ref.: #22468]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22468]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22468]			growth	28 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.449
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22468]	23553	+	-	-	-	-	+	+	+	-	-	+	-	+	+	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22468]	Sample type/isolated from	soil from ginseng field
[Ref.: #22468]	Geographic location (country and/or sea, region)	near Anseong
[Ref.: #22468]	Country	Republic of Korea
[Ref.: #22468]	Country ISO 3 Code	KOR
[Ref.: #22468]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a ginseng field of Anseong in South Korea
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22468]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22468]	Lysobacter panacisoli strain CJ29 16S ribosomal RNA gene, partial sequence	JQ806748	1311	GenBank ENA	1255263 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lysobacter panacisoli JCM 19212	GCA_009765165	scaffold	GenBank ENA	1255263 tax ID	*
[Ref.: #66792]	Lysobacter panacisoli strain JCM 19212	1255263.3	wgs	PATRIC	1255263 tax ID	*
[Ref.: #66792]	Lysobacter panacisoli JCM 19212	2896276005	draft	JGI IMG/M	1255263 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lysobacter panacisoli JCM 19212 NCBI: GCA_009765165.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysobacter panacisoli JCM 19212 NCBI: GCA_009765165.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.235	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.244	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.341	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.449	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.839	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	67.073	no

Availability in culture collections External links

[Ref.: #22468]

Culture collection no.

DSM 101805, JCM 19212, KACC 17502

[Ref.: #89621]

SI-ID 403185

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter prati sp. nov., isolated from a plateau meadow sample.	Fang BZ, Xie YG, Zhou XK, Zhang XT, Liu L, Jiao JY, Xiao M, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-020-01386-6	2020	*
Phylogeny	Lysobacter pedocola sp. nov., a novel species isolated from Korean soil.	Jang JH, Lee D, Seo T	J Microbiol	10.1007/s12275-018-8046-y	2018	*
Phylogeny	Lysobacter agri sp. nov., a bacterium isolated from soil.	Singh H, Won K, Du J, Yang JE, Akter S, Kim KY, Yi TH	Antonie Van Leeuwenhoek	10.1007/s10482-015-0510-7	2015	*
Phylogeny	Lysobacter panacisoli sp. nov., isolated from ginseng soil.	Choi JH, Seok JH, Cha JH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.062034-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22468

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101805

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89621

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403185.1 )

* These data were automatically processed and therefore are not curated

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Lysobacter panacisoli JCM 19212

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