Name: Lysobacter panacisoli CJ29
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131176

Type strain:

Species: Lysobacter panacisoli

Strain Designation: CJ29

Culture col. no.: DSM 101805, JCM 19212, KACC 17502

Strain history: C.-J. Cha CJ29.

NCBI tax ID(s): 1255263 (species)

SI-ID 403185

DSM 101805

Section

Lysobacter panacisoli CJ29 is a mesophilic, motile bacterium that was isolated from soil from ginseng field.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Lysobacter*
	Species	**Lysobacter panacisoli**
	Full Scientific Name (LPSN)	Lysobacter panacisoli Choi et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %92.582

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22468]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22468]

Culture medium growth

[Ref.: #22468]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22468]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22468]			growth	28 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #22468]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22468]	23553	+	-	-	-	-	+	+	+	-	-	+	-	+	+	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22468]	Sample type/isolated from	soil from ginseng field
[Ref.: #22468]	Geographic location (country and/or sea, region)	near Anseong
[Ref.: #22468]	Country	Republic of Korea
[Ref.: #22468]	Country ISO 3 Code	KOR
[Ref.: #22468]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from a ginseng field of Anseong in South Korea
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22468]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22468]	Lysobacter panacisoli strain CJ29 16S ribosomal RNA gene, partial sequence	JQ806748	1311	ENA	1255263 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lysobacter panacisoli JCM 19212	GCA_009765165	scaffold	GenBank	1255263 tax ID	*
[Ref.: #66792]	Lysobacter panacisoli strain JCM 19212	1255263.3	wgs	PATRIC	1255263 tax ID	*
[Ref.: #66792]	Lysobacter panacisoli JCM 19212	2896276005	draft	JGI IMG/M	1255263 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lysobacter panacisoli JCM 19212 NCBI: GCA_009765165.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysobacter panacisoli JCM 19212 NCBI: GCA_009765165.1
[Ref.: #69480]	motile	yes	68.634	no
[Ref.: #69480]	flagellated	no	81.546	no
[Ref.: #69480]	gram-positive	no	98.664	no
[Ref.: #69480]	anaerobic	no	98.894	no
[Ref.: #69480]	aerobic	yes	94.691	no
[Ref.: #69480]	halophile	no	97.25	no
[Ref.: #69480]	spore-forming	no	96.319	no
[Ref.: #69480]	glucose-util	yes	87.074	yes
[Ref.: #69480]	thermophile	no	97.459	yes
[Ref.: #69480]	glucose-ferment	no	89.955	no

Availability in culture collections External links

[Ref.: #22468]

Culture collection no.

DSM 101805, JCM 19212, KACC 17502

[Ref.: #89621]

SI-ID 403185

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lysobacter prati sp. nov., isolated from a plateau meadow sample.	Fang BZ, Xie YG, Zhou XK, Zhang XT, Liu L, Jiao JY, Xiao M, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-020-01386-6	2020	*
Phylogeny	Lysobacter pedocola sp. nov., a novel species isolated from Korean soil.	Jang JH, Lee D, Seo T	J Microbiol	10.1007/s12275-018-8046-y	2018	*
Phylogeny	Lysobacter agri sp. nov., a bacterium isolated from soil.	Singh H, Won K, Du J, Yang JE, Akter S, Kim KY, Yi TH	Antonie Van Leeuwenhoek	10.1007/s10482-015-0510-7	2015	*
Phylogeny	Lysobacter panacisoli sp. nov., isolated from ginseng soil.	Choi JH, Seok JH, Cha JH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.062034-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22468

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101805

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89621

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403185.1 )

* These data were automatically processed and therefore are not curated

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Lysobacter panacisoli JCM 19212

Lysobacter panacisoli JCM 19212

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