Corynebacterium glucuronolyticum (DSM 100936, C5)

Name: Corynebacterium glucuronolyticum (DSM 100936, C5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131061

Type strain

Strain Designation C5

Culture col. no. DSM 100936 C5

NCBI tax ID(s) 39791

Special Collections DSMZ ESA

Links

Corynebacterium glucuronolyticum C5 is a microaerophile, mesophilic prokaryote that was isolated from cleanroom facility, TAS.

microaerophile mesophilic genome sequence

Name and taxonomic classification

SI-ID 398334

DSM 100936

@ref 20215

Last LPSN update 2025-12-16 10:01:09

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium glucuronolyticum

Full scientific name Corynebacterium glucuronolyticum Funke et al. 1995

Synonyms (1)

Corynebacterium seminale

BacDive ID	Other strains from **Corynebacterium glucuronolyticum** (69)	Type strain
3155	C. glucuronolyticum DSM 44120, ATCC 51860, DMMZ 838, CCUG 35055, ... (type strain)
3156	C. glucuronolyticum B 12915, DSM 44288, CCUG 34780, CCUG 34888, ...
3157	C. glucuronolyticum Riegel B 86470, DSM 44289, CCUG 34890, IBS ...
135180	C. glucuronolyticum 687.84, CIP 101117
135181	C. glucuronolyticum 521.85, CIP 101727
135860	C. glucuronolyticum 445-86, CIP 102453
136322	C. glucuronolyticum CIP 104578, DMMZ 255
137626	C. glucuronolyticum 1028.85, CIP 102046
137836	C. glucuronolyticum 731.84, CIP 101116
137895	C. glucuronolyticum CIP 102134
138082	C. glucuronolyticum CIP 104579, DMMZ 751
147351	C. glucuronolyticum CCUG 33422, ATCC 51862
147352	C. glucuronolyticum CCUG 33423
147353	C. glucuronolyticum CCUG 33424
147354	C. glucuronolyticum CCUG 33425
148139	C. glucuronolyticum CCUG 34889
148140	C. glucuronolyticum CCUG 34891
148141	C. glucuronolyticum CCUG 34892
150357	C. glucuronolyticum CCUG 39719
150502	C. glucuronolyticum CCUG 41438
151381	C. glucuronolyticum CCUG 44017
151382	C. glucuronolyticum CCUG 44018
151530	C. glucuronolyticum CCUG 44228
155169	C. glucuronolyticum CCUG 56702
156205	C. glucuronolyticum CCUG 60721
156441	C. glucuronolyticum CCUG 61779
156605	C. glucuronolyticum CCUG 63486
157085	C. glucuronolyticum CCUG 69478
172860	C. glucuronolyticum CRBIP23.1
172861	C. glucuronolyticum CRBIP23.10
172862	C. glucuronolyticum CRBIP23.11
172863	C. glucuronolyticum CRBIP23.12
172864	C. glucuronolyticum 811040087, CRBIP23.13
172865	C. glucuronolyticum 811140028, CRBIP23.14
172866	C. glucuronolyticum 811240057, CRBIP23.15
172867	C. glucuronolyticum 811280029, CRBIP23.16
172868	C. glucuronolyticum 811290021, CRBIP23.17
172869	C. glucuronolyticum 812040001, CRBIP23.18
172870	C. glucuronolyticum 812260021, CRBIP23.19
172871	C. glucuronolyticum CRBIP23.2
172872	C. glucuronolyticum 812270002, CRBIP23.20
172873	C. glucuronolyticum 812270003, CRBIP23.21
172874	C. glucuronolyticum 901020018, CRBIP23.22
172875	C. glucuronolyticum 901260033, CRBIP23.23
172876	C. glucuronolyticum 901220006, CRBIP23.24
172877	C. glucuronolyticum 901290137, CRBIP23.25
172878	C. glucuronolyticum 901200190, CRBIP23.26
172879	C. glucuronolyticum 901240053, CRBIP23.27
172880	C. glucuronolyticum 811040087, CRBIP23.29
172881	C. glucuronolyticum CRBIP23.3
172882	C. glucuronolyticum 901240025, CRBIP23.30
172883	C. glucuronolyticum 901300136, CRBIP23.31
172884	C. glucuronolyticum 901240042, CRBIP23.32
172885	C. glucuronolyticum 902140018, CRBIP23.33
172886	C. glucuronolyticum 902050003, CRBIP23.34
172887	C. glucuronolyticum 902090011, CRBIP23.35
172888	C. glucuronolyticum 902180018, CRBIP23.36
172889	C. glucuronolyticum 902270115, CRBIP23.37
172890	C. glucuronolyticum 902250032, CRBIP23.38
172891	C. glucuronolyticum 902140033, CRBIP23.39
172892	C. glucuronolyticum CRBIP23.4
172893	C. glucuronolyticum 903040046, CRBIP23.40
172894	C. glucuronolyticum 902200081, CRBIP23.41
172895	C. glucuronolyticum 903040166, CRBIP23.42
172896	C. glucuronolyticum CRBIP23.5
172897	C. glucuronolyticum CRBIP23.6
172898	C. glucuronolyticum CRBIP23.7
172899	C. glucuronolyticum CRBIP23.8
172900	C. glucuronolyticum CRBIP23.9

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	94
125438	90.245	positive
125439	93.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22353	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
22353	BHI MEDIUM (DSMZ Medium 215)		Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22353	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
22353	microaerophile
125439	microaerophile	97.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	#Clean room

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
22353	cleanroom facility, TAS	Cannes	France	FRA	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22353	2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	Corynebacterium glucuronolyticum strain FDAARGOS_1111	complete		39791.11	39791	93.41
124043	ASM1672864v1 assembly for Corynebacterium glucuronolyticum FDAARGOS_1111	complete	GCA_016728645	39791.26	39791	92.81

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium glucuronolyticum strain FDAARGOS_1111
PATRIC: 39791.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	88.20	no
125439	motility	BacteriaNetⓘ	no	93.70	no
125439	gram_stain	BacteriaNetⓘ	positive	89.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	97.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium glucuronolyticum strain FDAARGOS_1111 strain Not applicable
PATRIC: 39791.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.25	no
125438	anaerobic	anaerobicⓘ	no	89.64	yes
125438	spore-forming	spore-formingⓘ	no	78.61	no
125438	aerobic	aerobicⓘ	no	64.58	yes
125438	thermophilic	thermophileⓘ	no	88.87	yes
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22353	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100936
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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