Corynebacterium glucuronolyticum (DSM 44288, CCUG 34780, CCUG 34888)

Name: Corynebacterium glucuronolyticum (DSM 44288, CCUG 34780, CCUG 34888)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 3156

Type strain

Strain Designation B 12915

Culture col. no. DSM 44288 CCUG 34780 CCUG 34888 CIP 104297 IBS B 12915 4 more

NCBI tax ID(s) 548478 39791

Special Collections DSMZ CCUG JCM CIP Wink compendium

History <- CCUG <- P. Riegel, ULP Strasbourg, B 12915 1995, H. Monteil, Louis Pasteur Univ., Strasbourg, France: strain IBS 12915 CIP 104297 <-- H. Monteil IBS B 12915. CIP <- 1995, H. Monteil, Louis Pasteur Univ., Strasbourg, France: strain IBS 12915

Links

Corynebacterium glucuronolyticum B 12915 is a facultative anaerobe, Gram-positive, rod-shaped bacterium that was isolated from human semen from patient with prostatitis.

Gram-positive rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 13103

LMG 19070,ATCC 51866,CCUG 34780,CIP 104297,DSM 44288,JCM 10394,CCUG 34888

@ref 20215

Last LPSN update 2026-02-09 11:18:26

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium glucuronolyticum

Full scientific name Corynebacterium glucuronolyticum Funke et al. 1995

Synonyms (1)

Corynebacterium seminale

BacDive ID	Other strains from **Corynebacterium glucuronolyticum** (69)	Type strain
3155	C. glucuronolyticum DSM 44120, ATCC 51860, DMMZ 838, CCUG 35055, ... (type strain)
3157	C. glucuronolyticum Riegel B 86470, DSM 44289, CCUG 34890, IBS ...
131061	C. glucuronolyticum C5, DSM 100936
135180	C. glucuronolyticum 687.84, CIP 101117
135181	C. glucuronolyticum 521.85, CIP 101727
135860	C. glucuronolyticum 445-86, CIP 102453
136322	C. glucuronolyticum CIP 104578, DMMZ 255
137626	C. glucuronolyticum 1028.85, CIP 102046
137836	C. glucuronolyticum 731.84, CIP 101116
137895	C. glucuronolyticum CIP 102134
138082	C. glucuronolyticum CIP 104579, DMMZ 751
147351	C. glucuronolyticum CCUG 33422, ATCC 51862
147352	C. glucuronolyticum CCUG 33423
147353	C. glucuronolyticum CCUG 33424
147354	C. glucuronolyticum CCUG 33425
148139	C. glucuronolyticum CCUG 34889
148140	C. glucuronolyticum CCUG 34891
148141	C. glucuronolyticum CCUG 34892
150357	C. glucuronolyticum CCUG 39719
150502	C. glucuronolyticum CCUG 41438
151381	C. glucuronolyticum CCUG 44017
151382	C. glucuronolyticum CCUG 44018
151530	C. glucuronolyticum CCUG 44228
155169	C. glucuronolyticum CCUG 56702
156205	C. glucuronolyticum CCUG 60721
156441	C. glucuronolyticum CCUG 61779
156605	C. glucuronolyticum CCUG 63486
157085	C. glucuronolyticum CCUG 69478
172860	C. glucuronolyticum CRBIP23.1
172861	C. glucuronolyticum CRBIP23.10
172862	C. glucuronolyticum CRBIP23.11
172863	C. glucuronolyticum CRBIP23.12
172864	C. glucuronolyticum 811040087, CRBIP23.13
172865	C. glucuronolyticum 811140028, CRBIP23.14
172866	C. glucuronolyticum 811240057, CRBIP23.15
172867	C. glucuronolyticum 811280029, CRBIP23.16
172868	C. glucuronolyticum 811290021, CRBIP23.17
172869	C. glucuronolyticum 812040001, CRBIP23.18
172870	C. glucuronolyticum 812260021, CRBIP23.19
172871	C. glucuronolyticum CRBIP23.2
172872	C. glucuronolyticum 812270002, CRBIP23.20
172873	C. glucuronolyticum 812270003, CRBIP23.21
172874	C. glucuronolyticum 901020018, CRBIP23.22
172875	C. glucuronolyticum 901260033, CRBIP23.23
172876	C. glucuronolyticum 901220006, CRBIP23.24
172877	C. glucuronolyticum 901290137, CRBIP23.25
172878	C. glucuronolyticum 901200190, CRBIP23.26
172879	C. glucuronolyticum 901240053, CRBIP23.27
172880	C. glucuronolyticum 811040087, CRBIP23.29
172881	C. glucuronolyticum CRBIP23.3
172882	C. glucuronolyticum 901240025, CRBIP23.30
172883	C. glucuronolyticum 901300136, CRBIP23.31
172884	C. glucuronolyticum 901240042, CRBIP23.32
172885	C. glucuronolyticum 902140018, CRBIP23.33
172886	C. glucuronolyticum 902050003, CRBIP23.34
172887	C. glucuronolyticum 902090011, CRBIP23.35
172888	C. glucuronolyticum 902180018, CRBIP23.36
172889	C. glucuronolyticum 902270115, CRBIP23.37
172890	C. glucuronolyticum 902250032, CRBIP23.38
172891	C. glucuronolyticum 902140033, CRBIP23.39
172892	C. glucuronolyticum CRBIP23.4
172893	C. glucuronolyticum 903040046, CRBIP23.40
172894	C. glucuronolyticum 902200081, CRBIP23.41
172895	C. glucuronolyticum 903040166, CRBIP23.42
172896	C. glucuronolyticum CRBIP23.5
172897	C. glucuronolyticum CRBIP23.6
172898	C. glucuronolyticum CRBIP23.7
172899	C. glucuronolyticum CRBIP23.8
172900	C. glucuronolyticum CRBIP23.9

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119652	positive	rod-shaped
125439	positive		90.8
125439			91.9
125438			93.5
125438	positive		91.125

Colony morphology

@ref	Colony color	Incubation period	Medium used
20042	Colorless	10-14 days	ISP 2
20042	Beige	10-14 days	ISP 3
20042	Beige	10-14 days	ISP 4
20042	Colorless	10-14 days	ISP 5
20042	Colorless	10-14 days	ISP 6
20042	Colorless	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
20042		ISP 2
20042		ISP 3
20042		ISP 4
20042		ISP 5
20042		ISP 6
20042		ISP 7

Multimedia

@ref:	11645
multimedia content:	DSM_44288.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44288.jpg
caption:	Medium 535a 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11645	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
20042	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20042	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20042	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20042	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20042	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20042	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
38494	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
119652	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
11645	positive	growth	37
20042	positive	optimum	37
38494	positive	growth	37
67770	positive	growth	37
119652	positive	growth	37-41
119652	negative	growth	5
119652	negative	growth	15

Physiology and metabolism

Oxygen tolerance

119652

Oxygen tolerancefacultative anaerobe

Spore formation

20042

Spore formationno

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
119652	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
119652	17632 ChEBI	nitrate	-	reduction
119652	17632 ChEBI	nitrate	+	respiration
119652	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68379	16199 ChEBI	urea	+	hydrolysis	from API Coryne
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119652	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119652	15688 ChEBI	acetoin	-
119652	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
119652	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119652	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68379	beta-glucuronidase	+	3.2.1.31	from API Coryne
119652	caseinase	-	3.4.21.50
119652	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
119652	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119652	gelatinase	-
68379	gelatinase	-		from API Coryne
119652	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
119652	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
119652	ornithine decarboxylase	-	4.1.1.17
119652	oxidase	-
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
119652	urease	+	3.5.1.5
68379	urease	+	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

65617

Fatty acid	Percentage	ECL
C18:1 ω9c	40.4	17.769
C16:0	25.1	16
C17:1 ω8c	7.7	16.792
C15:0	5.7	15
C15:1 ω8c	3.4	14.792
C18:2 ω6,9c/C18:0 ANTE	3.1	17.724
C16:1 ω9c	2.3	15.774
C18:0	2	18
C17:0	1.9	17
C19:1 ISO I	1.7	18.473
Unidentified	1.6	19.707
C17:0 anteiso	1.4	16.722
C19:0 ANTEISO	0.9	18.729
C18:1 ISO H	0.8	17.46
Unidentified	0.8	18.116
C14:0	0.7	14
C16:0 2OH	0.6	17.233

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
20042	-	-	-	-	+	-	-	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20042	not determinedn.d.	-	+	+	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-
119652	-	-	+	+	-	+	-	-	-	-	+	-	-	-	+	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119652	not determinedn.d.	+	-	-	-	+	+	-	-	-	+/-	+	+	+/-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119652	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Host	#Human	#Male
#Host Body Product	#Urogenital tract	#Semen

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
11645	human semen from patient with prostatitis	Strasbourg	France	FRA	Europe
67770	Semen of a patient with prostatitis	Strasbourg	France	FRA	Europe
119652	Human, Sperm	Strasbourg	France	FRA	Europe	1992

Taxonmaps

69479

Global distribution of 16S sequence AJ277970 (>99% sequence identity) for Corynebacterium glucuronolyticum subclade from Microbeatlas

Aquatic Samples	175
Soil Samples	212
Animal Samples	6509
Plant Samples	126
Total Samples	7022

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11645	2	Risk group (German classification) According to TRBA 466
20042	2	German classification According to TRBA 466
119652	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1688922v1 assembly for Corynebacterium glucuronolyticum FDAARGOS_1190	complete	GCA_016889225	39791.12		39791	95.91
66792	Corynebacterium glucuronolyticum ATCC 51866	contig		548478.6		548478	57.6
67770	ASM15959v1 assembly for Corynebacterium glucuronolyticum ATCC 51866	scaffold	GCA_000159595	548478.3	643886137	548478	50.43

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	C.seminale 16S rRNA gene	X84375	1323		39791
67770	Corynebacterium glucuronolyticum partial 16S rRNA gene, strain COR 232	AJ277970	1459		39791

GC content

@ref	GC-content (mol%)	Method
67770	59.7	capillary zone electrophoresis (CZE)
67770	59	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium glucuronolyticum ATCC 51866
NCBI: GCA_000159595

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	68.30	no
125439	motility	BacteriaNetⓘ	no	91.90	no
125439	gram_stain	BacteriaNetⓘ	positive	90.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	89.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium glucuronolyticum strain FDAARGOS_1190 strain Not applicable
PATRIC: 39791.12

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.13	no
125438	anaerobic	anaerobicⓘ	no	88.91	yes
125438	spore-forming	spore-formingⓘ	no	79.35	no
125438	aerobic	aerobicⓘ	no	63.86	yes
125438	thermophilic	thermophileⓘ	no	89.37	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	A Review on Microbial Species for Forensic Body Fluid Identification in Healthy and Diseased Humans.	Dass M, Singh Y, Ghai M.	Curr Microbiol	10.1007/s00284-023-03413-x	2023
Enzymology	Identification of Corynebacterium glucuronolyticum strains from the urogenital tract of humans and pigs.	Devriese LA, Riegel P, Hommez J, Vaneechoutte M, de Baere T, Haesebrouck F.	J Clin Microbiol	10.1128/jcm.38.12.4657-4659.2000	2000
	High-titer bio-succinic acid production from sequential alkalic and metal salt pretreated empty fruit bunch via simultaneous saccharification and fermentation	Khairil Anwar NAK, Hassan N, Mohd Yusof N, Idris A.	Industrial crops and products.	10.1016/j.indcrop.2021.113478	2021
Transcriptome	Isolating promoters from Corynebacterium ammoniagenes ATCC 6871 and application in CoA synthesis.	Hou Y, Chen S, Wang J, Liu G, Wu S, Tao Y.	BMC Biotechnol	10.1186/s12896-019-0568-9	2019
	Genome-resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep-sea hydrothermal vents.	Galambos D, Anderson RE, Reveillaud J, Huber JA.	Environ Microbiol	10.1111/1462-2920.14806	2019
	Bacterial life and dinitrogen fixation at a gypsum rock.	Boison G, Mergel A, Jolkver H, Bothe H.	Appl Environ Microbiol	10.1128/aem.70.12.7070-7077.2004	2004
Metabolism	Rope-producing strains of Bacillus spp. from wheat bread and strategy for their control by lactic acid bacteria.	Pepe O, Blaiotta G, Moschetti G, Greco T, Villani F.	Appl Environ Microbiol	10.1128/aem.69.4.2321-2329.2003	2003
Enzymology	Cloning and nucleotide sequences of the homoserine dehydrogenase genes (hom) and the threonine synthase genes (thrC) of the gram-negative obligate methylotroph Methylobacillus glycogenes.	Motoyama H, Maki K, Anazawa H, Ishino S, Teshiba S.	Appl Environ Microbiol	10.1128/aem.60.1.111-119.1994	1994
Phylogeny	Corynebacterium seminale sp. nov., a new species associated with genital infections in male patients.	Riegel P, Ruimy R, de Briel D, Prevost G, Jehl F, Bimet F, Christen R, Monteil H	J Clin Microbiol	10.1128/jcm.33.9.2244-2249.1995	1995

References

#11645	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44288
#20042	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38494	; Curators of the CIP;
#65617	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34780
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119652	Collection of Institut Pasteur ; Curators of the CIP; CIP 104297
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium glucuronolyticum (DSM 44288, CCUG 34780, CCUG 34888)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile?

API coryne

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016889225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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Fatty acid profile