Name: Flavonifractor plautii YL31
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130911

Type strain:

Species: Flavonifractor plautii

Strain Designation: YL31

Culture col. no.: DSM 26117

Strain history: <- B. Stecher, Max von Pettenkofer-Inst., Munich; YL31

NCBI tax ID(s): 292800 (species)

SI-ID 402755

DSM 26117

Other strains from Flavonifractor plautii

F. plautii S1, DSM 4000, ATCC 29863, CCUG ... (type strain)
F. plautii mOs-SRB-10A-2011, DSM 29137
F. plautii WHC-424-CC-2, DSM 29136
F. plautii 265, DSM 6740, ATCC 49531
F. plautii CCUG 39730
F. plautii CCUG 55143
F. plautii CCUG 70556
F. plautii H5_55, DSM 108238
F. plautii Cla-CZ-140, DSM 109053

Section

Flavonifractor plautii YL31 is an anaerobe, mesophilic bacterium that was isolated from C57BL/6J wildtype mouse.

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Flavonifractor*
	Species	**Flavonifractor plautii**
	Full Scientific Name (LPSN)	Flavonifractor plautii (Séguin 1928) Carlier et al. 2010

	Synonym	Fusobacterium plautii
	Synonym	Fusobacterium plauti
	Synonym	Clostridium orbiscindens
	Synonym	Eubacterium plautii

Information on morphological and physiological properties Morphology

[Ref.: #22203]

Incubation period

1-2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22203]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #22203]

Culture medium growth

[Ref.: #22203]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22203]

Culture medium composition

expand / minimize

[Ref.: #22203]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #22203]

Culture medium growth

[Ref.: #22203]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22203]

Culture medium composition

expand / minimize

[Ref.: #22203]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #22203]

Culture medium growth

[Ref.: #22203]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22203]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22203]			growth	37 °C

[Ref.: #22203]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22203]

Oxygen tolerance

anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #22203]	13244	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+/-	-	-	-	-	-	-	-
[Ref.: #22203]	13113	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-
[Ref.: #22203]	12923	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22203]	Sample type/isolated from	C57BL/6J wildtype mouse
[Ref.: #22203]	Geographic location (country and/or sea, region)	Zurich
[Ref.: #22203]	Country	Switzerland
[Ref.: #22203]	Country ISO 3 Code	CHE
[Ref.: #22203]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Mammals

#Muridae (Mouse/Rat)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR364773 (>99% sequence identity) for Flavonifractor plautii subclade from Microbeatlas

Aquatic Samples	3332
Soil Samples	1740
Animal Samples	266872
Plant Samples	646
Total Samples	272590

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22203]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22203]	Flavonifractor plautii strain YL31 16S ribosomal RNA gene, partial sequence	KR364773	1520	ENA	292800 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavonifractor plautii YL31	GCA_001688625	complete	GenBank	292800 tax ID	*
[Ref.: #66792]	Flavonifractor plautii YL31	GCA_016696805	chromosome	GenBank	292800 tax ID	*
[Ref.: #66792]	Flavonifractor plautii YL31	GCA_002221645	contig	GenBank	292800 tax ID	*
[Ref.: #66792]	Flavonifractor plautii YL31	2814123221	draft	JGI IMG/M	292800 tax ID	*
[Ref.: #66792]	Flavonifractor plautii YL31	2728369350	complete	JGI IMG/M	292800 tax ID	*
[Ref.: #66792]	Flavonifractor plautii YL31	GCA_023277885	chromosome	GenBank	292800 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavonifractor plautii YL31 NCBI: GCA_001688625.1
[Ref.: #69480]	flagellated	no	76.783	no
[Ref.: #69480]	gram-positive	yes	52.588	no
[Ref.: #69480]	anaerobic	yes	99.667	yes
[Ref.: #69480]	aerobic	no	98.435	yes
[Ref.: #69480]	halophile	no	94.244	no
[Ref.: #69480]	spore-forming	yes	53.344	no
[Ref.: #69480]	glucose-util	yes	86.901	no
[Ref.: #69480]	thermophile	no	93.49	yes
[Ref.: #69480]	motile	yes	76.765	no
[Ref.: #69480]	glucose-ferment	yes	60.426	no
[Ref.: #69480]	flagellated	no	76.783	no
[Ref.: #69480]	gram-positive	yes	52.588	no
[Ref.: #69480]	anaerobic	yes	99.667	yes
[Ref.: #69480]	halophile	no	94.244	no
[Ref.: #69480]	spore-forming	yes	53.344	no
[Ref.: #69480]	glucose-util	yes	86.901	no
[Ref.: #69480]	aerobic	no	98.435	yes
[Ref.: #69480]	thermophile	no	93.49	yes
[Ref.: #69480]	glucose-ferment	yes	60.426	no
[Ref.: #69480]	motile	yes	76.765	no

Availability in culture collections External links

[Ref.: #22203]

Culture collection no.

DSM 26117

[Ref.: #89391]

SI-ID 402755

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22203

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26117

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89391

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402755.1 )

* These data were automatically processed and therefore are not curated

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