Symbiobacterium turbinis (DSM 27625, JCM 15996, KCTC 4568)

Name: Symbiobacterium turbinis (DSM 27625, JCM 15996, KCTC 4568)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130833

Type strain

Culture col. no. DSM 27625 JCM 15996 KCTC 4568 KY 46

NCBI tax ID(s) 557450

Special Collections DSMZ JCM KCTC

History DSMZ <- T. Itoh, JCM <- K. Ueda, Nihon Univ., College of Bioresource Sci., Fujisawa, Japan; KY46 <- K. Yamada JCM <-- K. Ueda KY46.

Links

Symbiobacterium turbinis DSM 27625 is an anaerobe bacterium that was isolated from horned turban shell .

anaerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406030

JCM 15996,DSM 27625

@ref 20215

Last LPSN update 2026-05-29 08:37:28

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Symbiobacteriaceae

Genus Symbiobacterium

Species Symbiobacterium turbinis

Full scientific name Symbiobacterium turbinis Shiratori-Takano et al. 2014

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21828	SYMBIOBACTERIUM THERMOPHILUM MEDIUM (DSMZ Medium 1293)		Medium recipe at MediaDive	Name: SYMBIOBACTERIUM THERMOPHILUM MEDIUM (DSMZ Medium 1293) Composition: Tryptone 10.0 g/l Yeast extract 5.0 g/l NaCl 5.0 g/l NH4HCO3 3.2 g/l NaNO3 1.7 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21828	positive	growth	55
67770	positive	growth	55

Physiology and metabolism

Oxygen tolerance

21828

Oxygen toleranceanaerobe

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
21828	horned turban shell (Turbo cornutus)	Turbo cornutus	Kanagawa prefecture, Pacific coastline of Enoshima	Japan	JPN	Asia
67770	Horned turban shell (Turbo cornutus) collected on the Pacific coastline in Enoshima	Turbo cornutus	Kanagawa	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB455238 (>99% sequence identity) for Symbiobacterium turbinis subclade from Microbeatlas

Aquatic Samples	346
Soil Samples	2692
Animal Samples	299
Plant Samples	892
Total Samples	4229

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21828	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21828	Symbiobacterium turbinis gene for 16S rRNA, partial sequence	AB455238	1488		557450

GC content

@ref	GC-content (mol%)	Method
21828	67.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Symbiobacterium ostreiconchae sp. nov., Symbiobacterium turbinis sp. nov. and Symbiobacterium terraclitae sp. nov., isolated from shellfish, emended description of the genus Symbiobacterium and proposal of Symbiobacteriaceae fam. nov.	Shiratori-Takano H, Akita K, Yamada K, Itoh T, Sugihara T, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.063750-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21828	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27625
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Symbiobacterium turbinis (DSM 27625, JCM 15996, KCTC 4568)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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