Name: Symbiobacterium turbinis DSM 27625
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130833

Type strain:

Species: Symbiobacterium turbinis

Culture col. no.: DSM 27625, JCM 15996, KCTC 4568, KY 46

Strain history: K. Ueda KY46.

NCBI tax ID(s): 557450 (species)

SI-ID 406030

DSM 27625

Section

Symbiobacterium turbinis DSM 27625 is an anaerobe, thermophilic bacterium that was isolated from horned turban shell .

anaerobe
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Symbiobacteriaceae*
	Genus	*Symbiobacterium*
	Species	**Symbiobacterium turbinis**
	Full Scientific Name (LPSN)	Symbiobacterium turbinis Shiratori-Takano et al. 2014

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21828]

Culture medium

SYMBIOBACTERIUM THERMOPHILUM MEDIUM (DSMZ Medium 1293)

[Ref.: #21828]

Culture medium growth

[Ref.: #21828]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21828]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #21828]			growth	55 °C
[Ref.: #67770]			growth	55 °C

[Ref.: #21828]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #21828]

Oxygen tolerance

anaerobe

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21828]	Sample type/isolated from	horned turban shell (Turbo cornutus)
[Ref.: #21828]	Host species	Turbo cornutus
[Ref.: #21828]	Geographic location (country and/or sea, region)	Kanagawa prefecture, Pacific coastline of Enoshima
[Ref.: #21828]	Country	Japan
[Ref.: #21828]	Country ISO 3 Code	JPN
[Ref.: #21828]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Horned turban shell (Turbo cornutus) collected on the Pacific coastline in Enoshima
[Ref.: #67770]	Host species	Turbo cornutus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kanagawa
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Mollusca

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB455238 (>99% sequence identity) for Symbiobacterium turbinis subclade from Microbeatlas

Aquatic Samples	346
Soil Samples	2692
Animal Samples	299
Plant Samples	892
Total Samples	4229

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21828]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21828]	Symbiobacterium turbinis gene for 16S rRNA, partial sequence	AB455238	1488	ENA	557450 tax ID

[Ref.: #21828]

GC-content

67.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #21828]

Culture collection no.

DSM 27625, JCM 15996, KCTC 4568, KY 46

[Ref.: #89320]

SI-ID 406030

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Symbiobacterium ostreiconchae sp. nov., Symbiobacterium turbinis sp. nov. and Symbiobacterium terraclitae sp. nov., isolated from shellfish, emended description of the genus Symbiobacterium and proposal of Symbiobacteriaceae fam. nov.	Shiratori-Takano H, Akita K, Yamada K, Itoh T, Sugihara T, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.063750-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21828

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27625

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#89320

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406030.1 )

* These data were automatically processed and therefore are not curated

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