Symbiobacterium ostreiconchae (DSM 27624, JCM 15048, KCTC 4567)

Name: Symbiobacterium ostreiconchae (DSM 27624, JCM 15048, KCTC 4567)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130832

Type strain

Culture col. no. DSM 27624 JCM 15048 KCTC 4567 KY 38

NCBI tax ID(s) 471799

Special Collections DSMZ JCM KCTC

Links

Symbiobacterium ostreiconchae DSM 27624 is an anaerobe, thermophilic prokaryote that was isolated from oyster shell.

anaerobe thermophilic 16S sequence

Name and taxonomic classification

SI-ID 403607

JCM 15048,DSM 27624

@ref 20215

Last LPSN update 2025-12-16 10:01:05

Domain Bacillati

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Symbiobacteriaceae

Genus Symbiobacterium

Species Symbiobacterium ostreiconchae

Full scientific name Symbiobacterium ostreiconchae Shiratori-Takano et al. 2014

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21827	SYMBIOBACTERIUM THERMOPHILUM MEDIUM (DSMZ Medium 1293)		Medium recipe at MediaDive	Name: SYMBIOBACTERIUM THERMOPHILUM MEDIUM (DSMZ Medium 1293) Composition: Tryptone 10.0 g/l Yeast extract 5.0 g/l NaCl 5.0 g/l NH4HCO3 3.2 g/l NaNO3 1.7 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21827	positive	growth	60	thermophilic
67770	positive	growth	60	thermophilic

Physiology and metabolism

Oxygen tolerance

21827

Oxygen toleranceanaerobe

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Mollusca

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
21827	oyster shell	Kanagawa prefecture, Pacific coastline of Enoshima	Japan	JPN	Asia
67770	Oyster shell collected on the Pacific coastline in Enoshima	Kanagawa	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB361629 (>99% sequence identity) for Symbiobacterium from Microbeatlas

Aquatic Samples	199
Soil Samples	553
Animal Samples	190
Plant Samples	357
Total Samples	1299

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21827	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21827	Symbiobacterium ostreiconchae gene for 16S rRNA, partial sequence	AB361629	1487		471799

GC content

@ref	GC-content (mol%)	Method
21827	68.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Symbiobacterium ostreiconchae sp. nov., Symbiobacterium turbinis sp. nov. and Symbiobacterium terraclitae sp. nov., isolated from shellfish, emended description of the genus Symbiobacterium and proposal of Symbiobacteriaceae fam. nov.	Shiratori-Takano H, Akita K, Yamada K, Itoh T, Sugihara T, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.063750-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21827	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27624
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Symbiobacterium ostreiconchae (DSM 27624, JCM 15048, KCTC 4567)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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