Name: Exiguobacterium enclense NIO-1109
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130820

Type strain:

Species: Exiguobacterium enclense

Strain Designation: NIO-1109

Culture col. no.: DSM 25128, CCTCC AB 2011124, NCIM 5457, CIP 110958

Strain history: CIP <- 2015, NCIM <- strain NIO-1109

NCBI tax ID(s): 1017277 (species)

Section

Exiguobacterium enclense NIO-1109 is a mesophilic, motile bacterium that was isolated from marine sediment.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Exiguobacterium*
	Species	**Exiguobacterium enclense**
	Full Scientific Name (LPSN)	Exiguobacterium enclense Dastager et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #119023]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #119023]	Cell shape	rod-shaped

[Ref.: #119023]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.816

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42035]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #42035]

Culture medium growth

[Ref.: #42035]

Culture medium composition

expand / minimize

[Ref.: #119023]

Culture medium

CIP Medium 72

[Ref.: #119023]

Culture medium growth

[Ref.: #119023]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #42035]			growth	30 °C

[Ref.: #42035]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %94.992

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21593]	Sample type/isolated from	marine sediment
[Ref.: #21593]	Geographic location (country and/or sea, region)	Goa State, Chorao Island (15° 32' 34'' N 73° 55' 15'' E)
[Ref.: #21593]	Country	India
[Ref.: #21593]	Country ISO 3 Code	IND
[Ref.: #21593]	Continent	Asia
[Ref.: #21593]	Geographic location	15.5428°/73.9208°

[Ref.: #119023]	Sample type/isolated from	Environment, Marine sediment sample
[Ref.: #119023]	Geographic location (country and/or sea, region)	Chorao Island, Goa
[Ref.: #119023]	Country	India
[Ref.: #119023]	Country ISO 3 Code	IND
[Ref.: #119023]	Continent	Asia
[Ref.: #119023]	Isolation date	2011-06-08
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #119023]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21593]	Exiguobacterium enclense strain NIO-1109 16S ribosomal RNA gene, partial sequence	JF893462	1415	ENA	1017277 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Exiguobacterium enclense NIO-1109	GCA_900096925	contig	GenBank	1017277 tax ID	*
[Ref.: #66792]	Exiguobacterium enclense NIO-1109	GCA_001456895	contig	GenBank	1017277 tax ID	*
[Ref.: #66792]	Exiguobacterium enclense strain NIO-1109	1017277.4	wgs	PATRIC	1017277 tax ID	*
[Ref.: #66792]	Exiguobacterium enclense NIO-1109	2690315819	draft	JGI IMG/M	1017277 tax ID	*

[Ref.: #21593]

GC-content

46.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Exiguobacterium enclense strain NIO-1109 PATRIC: 1017277.5
[Ref.: #69481]	spore-forming	no	60	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Exiguobacterium enclense strain NIO-1109 PATRIC: 1017277.4
[Ref.: #69480]	motile	yes	90.605	no
[Ref.: #69480]	flagellated	yes	75.684	no
[Ref.: #69480]	gram-positive	yes	90.205	no
[Ref.: #69480]	anaerobic	no	98.637	no
[Ref.: #69480]	aerobic	yes	90.09	no
[Ref.: #69480]	halophile	yes	74.177	no
[Ref.: #69480]	spore-forming	no	76.788	no
[Ref.: #69480]	thermophile	no	99.663	yes
[Ref.: #69480]	glucose-util	yes	90.388	no
[Ref.: #69480]	glucose-ferment	no	76.643	no

Availability in culture collections External links

[Ref.: #21593]

Culture collection no.

DSM 25128, CCTCC AB 2011124, NCIM 5457, CIP 110958

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Exiguobacterium enclense sp. nov., isolated from sediment.	Dastager SG, Mawlankar R, Sonalkar VV, Thorat MN, Mual P, Verma A, Krishnamurthi S, Tang SK, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000149	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21593

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25128

#42035 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#119023 Collection of Institut Pasteur ; Curators of the CIP; CIP 110958
* These data were automatically processed and therefore are not curated

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Exiguobacterium enclense strain NIO-1109

Exiguobacterium enclense strain NIO-1109

Change proposal

Change proposal