Exiguobacterium indicum (DSM 25128, CCTCC AB 2011124, NCIM 5457)

Name: Exiguobacterium indicum (DSM 25128, CCTCC AB 2011124, NCIM 5457)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130820

Type strain

Strain Designation NIO-1109

Culture col. no. DSM 25128 CCTCC AB 2011124 NCIM 5457 NIO-1109 CIP 110958

NCBI tax ID(s) 296995

Special Collections DSMZ CIP

History <- S. G. Dastager, National Institute of Oceanography, Mumbai, India; NIO-1109 CIP <- 2015, NCIM <- strain NIO-1109

Links

Exiguobacterium indicum NIO-1109 is a mesophilic, Gram-positive, motile prokaryote that was isolated from marine sediment.

Gram-positive motile rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 412350

CIP 110958

@ref 20215

Last LPSN update 2026-02-09 11:31:19

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Exiguobacterium

Species Exiguobacterium indicum

Full scientific name Exiguobacterium indicum Chaturvedi and Shivaji 2006

Synonyms (1)

Exiguobacterium enclense

BacDive ID	Other strains from **Exiguobacterium indicum** (1)	Type strain
24782	E. indicum DSM 28408, CCUG 58096, HHS 31, IAM 15368, ... (type strain)

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
119023	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
42035	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119023	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
42035	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	93.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
21593	marine sediment	Goa State, Chorao Island (15° 32' 34'' N 73° 55' 15'' E)	India	IND	Asia	15.5428	73.9208 15.5428/73.9208
119023	Environment, Marine sediment sample	Chorao Island, Goa	India	IND	Asia			2011-06-08

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
119023	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2616645037 annotated assembly for Exiguobacterium indicum NIO-1109	contig	GCA_900096925	1017277.5	2616645037	1017277	75.49
66792	ASM145689v1 assembly for Exiguobacterium indicum NIO-1109	contig	GCA_001456895	1017277.4	2690315819	1017277	75.49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21593	Exiguobacterium enclense strain NIO-1109 16S ribosomal RNA gene, partial sequence	JF893462	1415		1017277

GC content

@ref	GC-content (mol%)	Method
21593	46.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Exiguobacterium enclense NIO-1109
NCBI: GCA_900096925

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	93.10	no
125439	gram_stain	BacteriaNetⓘ	variable	76.10	no
125439	motility	BacteriaNetⓘ	yes	83.00	no
125439	spore_formation	BacteriaNetⓘ	yes	89.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Exiguobacterium enclense strain NIO-1109
PATRIC: 1017277.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.29	no
125438	anaerobic	anaerobicⓘ	no	96.12	no
125438	spore-forming	spore-formingⓘ	yes	52.50	no
125438	aerobic	aerobicⓘ	yes	66.75	no
125438	thermophilic	thermophileⓘ	no	93.88	no
125438	flagellated	motile2+ⓘ	yes	81.93	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Exiguobacterium enclense sp. nov., isolated from sediment.	Dastager SG, Mawlankar R, Sonalkar VV, Thorat MN, Mual P, Verma A, Krishnamurthi S, Tang SK, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000149	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21593	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25128
#42035	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#119023	Collection of Institut Pasteur ; Curators of the CIP; CIP 110958
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Exiguobacterium indicum (DSM 25128, CCTCC AB 2011124, NCIM 5457)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900096925

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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